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PDBsum entry 1pym

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Top Page protein ligands metals Protein-protein interface(s) links
Phosphotransferase PDB id
1pym
Jmol
Contents
Protein chains
291 a.a. *
Ligands
OXL ×2
Metals
_MG ×2
Waters ×590
* Residue conservation analysis
procheck   Generate full PROCHECK analyses

PROCHECK summary for 1pym

Ramachandran plot

PROCHECK statistics

1. Ramachandran Plot statistics


                                         No. of
                                        residues     %-tage
                                         ------      ------
Most favoured regions      [A,B,L]          495       93.9%          
Additional allowed regions [a,b,l,p]         30        5.7%          
Generously allowed regions [~a,~b,~l,~p]      2        0.4%          
Disallowed regions         [XX]               0        0.0%          
                                           ----      ------
Non-glycine and non-proline residues        527      100.0%

End-residues (excl. Gly and Pro)              3

Glycine residues                             32
Proline residues                             18
                                           ----
Total number of residues                    580


Based on an analysis of 118 structures of resolution of at least 2.0 Angstroms and R-factor no greater than 20.0 a good quality model would be expected to have over 90% in the most favoured regions [A,B,L].


2. G-Factors

                                                Average
Parameter                            Score       Score
---------                            -----       -----
Dihedral angles:-
     Phi-psi distribution             0.09      
     Chi1-chi2 distribution          -0.07      
     Chi1 only                        0.11      
     Chi3 & chi4                      0.43      
     Omega                            0.29      
                                                   0.16      
                                                  =====
Main-chain covalent forces:-
     Main-chain bond lengths          0.22      
     Main-chain bond angles           0.09      
                                                   0.15      
                                                  =====

     OVERALL AVERAGE                               0.16      
                                                  =====

G-factors provide a measure of how unusual, or out-of-the-ordinary, a property is.

Values below -0.5*  - unusual
Values below -1.0** - highly unusual
Important note: The main-chain bond-lengths and bond angles are compared with the Engh & Huber (1991) ideal values derived from small-molecule data. Therefore, structures refined using different restraints may show apparently large deviations from normality.