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PDBsum entry 1pym

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Top Page protein ligands metals Protein-protein interface(s) tunnels links
Tunnel analysis for: 1pym calculated with MOLE 2.0 PDB id
1pym
Tunnels calculated on whole structure Tunnels calculated excluding ligands

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10 tunnels, coloured by tunnel radius 13 tunnels, coloured by tunnel radius 13 tunnels, coloured as in
list below
Tunnels
Length
Hydropathy
Hydrophobicity
Polarity
Mutability
Residue..type
Ligands
Radius
1 1.60 19.3 1.79 0.46 1.6 88 0 0 1 7 2 0 0  189 MSE A,203 MSE A,230 MSE A
2 1.62 20.2 1.33 0.24 4.9 91 2 0 0 7 1 0 0  189 MSE A,203 MSE A,230 MSE A
3 1.62 19.1 0.33 -0.10 12.2 80 1 1 2 5 0 0 0  14 MSE A,234 MSE A
4 1.48 19.6 -0.17 -0.35 13.8 80 1 1 1 5 0 0 0  14 MSE A,234 MSE A
5 2.13 4.7 -0.98 -0.35 23.5 70 1 1 0 2 1 1 0  
6 2.03 5.0 -1.50 -0.68 4.3 80 1 0 1 0 0 1 0  
7 1.77 8.6 -1.74 -0.55 25.9 80 1 1 1 1 2 0 0  
8 1.86 7.1 -0.98 -0.78 8.0 78 1 0 1 0 0 1 0  
9 1.66 9.9 -1.01 -0.47 18.4 76 2 1 0 1 1 1 0  
10 3.35 4.6 -1.28 -0.54 21.8 75 2 2 0 0 1 0 0  
11 3.28 7.0 -1.22 -0.51 22.9 78 1 2 0 1 1 0 0  
12 1.78 10.6 -1.91 -0.62 26.8 78 3 2 0 0 1 0 0  
13 2.05 7.1 -1.46 -0.65 7.7 80 1 0 1 1 0 1 0  

Residue-type_colouring
Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine
H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C

Acknowledgement
Tunnels were calculated by MOLE 2.0 program and visualized using Pymol 0.97rc.
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