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PDBsum entry 1pyd
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Pore analysis for: 1pyd calculated with  MOLE 2.0
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PDB id
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1pyd
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Pores calculated on whole structure |
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Pores calculated excluding ligands
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3 pores,
coloured by radius |
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5 pores,
coloured by radius
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5 pores,
coloured as in
list below
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Pores are connected internal spaces going through the structure. Only pores longer than 25 Å are shown. |
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Free R
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Length
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HPathy
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HPhob
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Polar
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Rel Mut
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Residue..type
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Ligands
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Radius |
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1 |
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1.14 |
1.14 |
34.4 |
1.05 |
0.19 |
2.4 |
84 |
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0 |
1 |
1 |
4 |
4 |
0 |
0 |
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2 |
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1.36 |
1.70 |
54.6 |
-1.05 |
-0.35 |
8.3 |
85 |
6 |
1 |
7 |
6 |
2 |
1 |
0 |
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3 |
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1.31 |
1.47 |
74.1 |
-0.95 |
-0.39 |
10.1 |
86 |
5 |
2 |
9 |
6 |
3 |
1 |
0 |
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4 |
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1.65 |
1.72 |
84.9 |
-0.09 |
-0.07 |
11.9 |
88 |
3 |
7 |
11 |
16 |
4 |
1 |
0 |
TPP 557 A TPP 557 B
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5 |
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1.39 |
1.66 |
95.5 |
-0.16 |
-0.15 |
10.8 |
87 |
7 |
6 |
10 |
15 |
5 |
1 |
0 |
TPP 557 A TPP 557 B
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Residue-type_colouring |
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Positive
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Negative
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Neutral
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Aliphatic
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Aromatic
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Pro & Gly
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Cysteine
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H,K,R
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D,E
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S,T,N,Q
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A,V,L,I,M
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F,Y,W
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P,G
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C
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MOLE 2.0 program