 |
PDBsum entry 1pvo
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
 |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Pore analysis for: 1pvo calculated with  MOLE 2.0
|
PDB id
|
|
|
|
1pvo
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Pores calculated on whole structure |
|
Pores calculated excluding ligands
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
 |
|
|
|
|
|
20 pores,
coloured by radius |
|
21 pores,
coloured by radius
|
21 pores,
coloured as in
list below
|
|
|
|
|
|
Pores are connected internal spaces going through the structure. Only pores longer than 25 Å are shown. |
|
|
|
|
|
|
|
Free R
|
|
|
|
|
|
|
Length
|
|
|
|
|
|
|
HPathy
|
|
|
|
|
|
|
HPhob
|
|
|
|
|
|
|
Polar
|
|
|
|
|
|
|
Rel Mut
|
|
|
|
|
|
|
Residue..type
|
|
|
|
|
|
|
Ligands
|
|
|
|
|
|
|
 |
Radius |
 |
1 |
 |
2.91 |
5.76 |
34.4 |
-1.44 |
-0.46 |
18.9 |
83 |
|
4 |
3 |
3 |
3 |
1 |
0 |
0 |
|
C 2 J
|
 |
|
2 |
 |
1.88 |
2.06 |
46.2 |
-0.86 |
-0.39 |
15.9 |
88 |
3 |
2 |
3 |
5 |
0 |
1 |
0 |
C 2 J
|
|
3 |
 |
2.85 |
3.08 |
58.4 |
-1.53 |
-0.57 |
17.9 |
84 |
8 |
5 |
6 |
6 |
0 |
1 |
0 |
C 2 H
|
|
4 |
 |
2.22 |
2.41 |
63.6 |
-2.62 |
-0.53 |
34.0 |
73 |
11 |
4 |
1 |
1 |
1 |
1 |
0 |
|
|
5 |
 |
2.42 |
2.68 |
66.8 |
-3.21 |
-0.64 |
40.8 |
81 |
9 |
6 |
1 |
1 |
0 |
0 |
0 |
ANP 603 C
|
|
6 |
 |
1.18 |
1.26 |
70.3 |
-1.59 |
-0.34 |
24.6 |
80 |
10 |
4 |
2 |
5 |
1 |
1 |
0 |
ANP 604 D
|
|
7 |
 |
1.27 |
1.42 |
74.2 |
-1.25 |
-0.02 |
22.9 |
75 |
8 |
3 |
1 |
4 |
3 |
1 |
0 |
ANP 602 B
|
|
8 |
 |
2.33 |
3.26 |
88.8 |
-2.69 |
-0.37 |
34.6 |
77 |
12 |
8 |
2 |
3 |
3 |
1 |
0 |
ANP 603 C ANP 604 D
|
|
9 |
 |
2.43 |
2.70 |
90.6 |
-2.53 |
-0.27 |
35.0 |
77 |
12 |
6 |
0 |
3 |
3 |
0 |
0 |
ANP 602 B ANP 603 C
|
|
10 |
 |
2.38 |
2.52 |
99.7 |
-1.65 |
-0.47 |
21.1 |
84 |
8 |
6 |
3 |
5 |
2 |
1 |
0 |
ANP 602 B
|
|
11 |
 |
1.80 |
1.93 |
108.6 |
-0.76 |
-0.38 |
14.2 |
83 |
7 |
6 |
4 |
9 |
1 |
0 |
0 |
|
|
12 |
|
2.17 |
3.53 |
122.0 |
-2.20 |
-0.41 |
29.6 |
75 |
12 |
9 |
3 |
4 |
3 |
0 |
0 |
ANP 605 E
|
|
13 |
|
1.78 |
1.91 |
131.6 |
-2.21 |
-0.33 |
28.1 |
79 |
12 |
7 |
2 |
5 |
3 |
1 |
0 |
ANP 602 B
|
|
14 |
|
2.32 |
3.36 |
139.1 |
-2.63 |
-0.38 |
32.9 |
74 |
14 |
10 |
2 |
2 |
5 |
1 |
0 |
ANP 602 B ANP 604 D
|
|
15 |
|
1.79 |
1.93 |
143.8 |
-1.69 |
-0.34 |
22.2 |
82 |
12 |
7 |
9 |
8 |
1 |
3 |
0 |
C 2 J C 2 K C 2 L
|
|
16 |
|
1.21 |
1.49 |
151.8 |
-1.58 |
-0.41 |
21.6 |
83 |
6 |
9 |
7 |
7 |
2 |
1 |
0 |
ANP 601 A
|
|
17 |
|
2.22 |
2.34 |
171.3 |
-2.71 |
-0.46 |
34.8 |
75 |
20 |
11 |
2 |
2 |
4 |
2 |
0 |
ANP 604 D
|
|
18 |
|
1.83 |
1.89 |
169.0 |
-2.40 |
-0.33 |
32.3 |
81 |
17 |
10 |
2 |
8 |
2 |
1 |
0 |
ANP 603 C
|
|
19 |
|
2.14 |
3.47 |
173.9 |
-1.93 |
-0.37 |
24.7 |
80 |
16 |
9 |
8 |
9 |
3 |
4 |
0 |
ANP 602 B C 2 J C 2 K
|
|
20 |
|
1.66 |
1.96 |
228.6 |
-2.36 |
-0.35 |
29.9 |
79 |
19 |
14 |
4 |
7 |
4 |
2 |
0 |
ANP 604 D
|
 |
21 |
|
1.17 |
1.65 |
262.8 |
-0.51 |
-0.08 |
17.2 |
81 |
17 |
10 |
8 |
20 |
3 |
5 |
0 |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
 |
|
|
 |
Residue-type_colouring |
 |
|
|
|
Positive
|
Negative
|
Neutral
|
Aliphatic
|
Aromatic
|
Pro & Gly
|
Cysteine
|
|
H,K,R
|
D,E
|
S,T,N,Q
|
A,V,L,I,M
|
F,Y,W
|
P,G
|
C
|
|
|
|
MOLE 2.0 program