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PDBsum entry 1pvi

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Top Page protein dna_rna Protein-protein interface(s) clefts links
Cleft analysis for: 1pvi PDB id
1pvi
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Binding-site(s)
Binding-surface(s)
Coloured by
 cleft (as in table below)
 closest atom type
 residue type
Clefts
R1
ratio
Accessible
vertices
Buried
vertices
Average
depth
Residue..type
Ligands
Volume
1 3807.00 1.03 68.22 5 10.77 4 17.48 1 8 5 9 13 2 9 0  
2 3695.20 0.00 72.38 3 13.99 1 13.08 2 11 5 9 11 4 8 0  
3 2532.52 0.00 72.34 4 12.28 3 12.17 4 13 4 4 6 1 1 0  
4 1129.78 0.00 75.49 2 9.81 5 10.12 6 4 4 5 9 5 4 0  
5 758.95 0.00 63.71 8 6.99 7 11.45 5 2 3 4 4 1 1 0  
6 615.09 0.00 92.33 1 12.81 2 0.00 10 3 4 2 4 5 0 0  
7 734.48 0.00 63.83 7 5.92 9 12.85 3 4 2 5 4 1 2 0  
8 538.31 0.00 62.52 10 4.94 10 9.62 7 1 2 4 4 0 1 0  
9 514.27 0.00 65.24 6 6.40 8 5.03 9 0 0 3 7 2 0 0  
10 432.00 0.00 63.66 9 8.22 6 6.99 8 3 2 1 0 1 0 0  
 Protein structure

Residue-type_colouring
Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine
H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C
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