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PDBsum entry 1pth

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Top Page protein ligands Protein-protein interface(s) clefts links
Cleft analysis for: 1pth PDB id
1pth
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Binding-site(s)
Binding-surface(s)
Coloured by
 cleft (as in table below)
 closest atom type
 residue type
 residue conservation
Clefts
R1
ratio
Accessible
vertices
Buried
vertices
Average
depth
Residue..type
Ligands
Volume
1 22404.94 2.22 72.69 3 13.41 2 27.75 1 68 38 84 83 54 52 7 NAG 671[A], NAG 672[A], NAG 671[B],
NAG 672[B], BOG 702[B], HEM 601[
A], HEM 602[B] (149 atoms)
2 10110.23 0.00 73.12 2 13.80 1 23.49 2 26 15 40 35 20 23 5 BOG 702[A] (20 atoms)
3 1621.27 0.00 65.35 8 7.47 8 7.81 7 7 7 8 6 5 3 2  
4 955.55 0.00 57.23 9 7.76 7 8.16 6 6 3 2 4 1 4 1  
5 729.84 0.00 74.00 1 11.47 3 10.62 4 0 3 8 8 2 3 0  
6 790.59 0.00 70.76 4 10.76 4 11.02 3 0 3 8 9 3 2 0  
7 806.20 0.00 56.65 10 6.76 10 8.19 5 5 2 1 5 1 2 0  
8 569.95 0.00 66.04 7 9.64 5 6.56 8 4 2 3 4 1 0 0  
9 604.12 0.00 66.13 6 9.60 6 6.12 9 4 2 3 4 1 1 0  
10 631.55 0.00 68.71 5 6.88 9 5.73 10 2 2 4 1 3 5 1 NAG 661[B] (4 atoms)
 Protein structure

Residue-type_colouring
Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine
H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C
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