spacer
spacer

PDBsum entry 1pjj

Go to PDB code: 
Top Page protein dna_rna ligands metals tunnels links
Tunnel analysis for: 1pjj calculated with MOLE 2.0 PDB id
1pjj
Tunnels calculated on whole structure Tunnels calculated excluding ligands

View options
MOLEonline 2.0 manipulation
and
visualization
with HETATM:
without HETATM:
 
7 tunnels, coloured by tunnel radius 3 tunnels, coloured by tunnel radius 3 tunnels, coloured as in
list below
Tunnels
Length
Hydropathy
Hydrophobicity
Polarity
Mutability
Residue..type
Ligands
Radius
1 1.36 11.0 -0.65 0.03 17.0 76 1 2 1 3 1 0 0  
2 2.56 5.8 -1.75 -0.82 20.0 92 1 2 0 0 0 0 0  
3 1.65 5.2 -1.23 -0.29 22.5 92 1 1 0 1 0 1 0  

Residue-type_colouring
Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine
H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C

Acknowledgement
Tunnels were calculated by MOLE 2.0 program and visualized using Pymol 0.97rc.
spacer
spacer