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Ligand clusters for UniProt code P42371

Ligand clusters for P42371: Formamidopyrimidine-DNA glycosylase OS=Lactococcus lactis subsp. cremoris GN=mutM PE=1 SV=3

5 ligand clusters
Cluster 1.
2 ligand types
13 ligands
Cluster 2.
1 ligand type
1 ligand
Cluster 3.
1 ligand type
13 ligands
Cluster 4.
1 ligand type
4 ligands
Cluster 5.
1 ligand type
3 ligands
Representative protein: 4pd2A  
 

Structures

PDB   Schematic diagram
4pd2A    
1xc8A    
1tdzA    
2xzuA    
4pczA    
 more ...

 

 Cluster 1 contains 2 ligand types

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Ligand Description

_Zn
 
1. Metal: _ZN × 12
PDB codes: 1kfv(A), 1nnj(A), 1pji(A), 1pjj(A), 1pm5(A), 1tdz(A), 1xc8(A), 2xzf(A), 2xzu(A), 3c58(A), 4pcz(A), 4pd2(A).


 
2. Ligand: 2ON × 1
2-Sulfanyl-1,9-Dihydro-6h-Purin-6-One
PDB code: 4pdi(A).

 

 Cluster 2 contains 1 ligand type

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Ligand Description


 
1. Ligand: 2ON × 1
2-Sulfanyl-1,9-Dihydro-6h-Purin-6-One
PDB code: 4pdg(A).

 

 Cluster 3 contains 1 ligand type

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Ligand Description


 
1. Ligand: GOL × 13
Glycerol
PDB codes: 1kfv(A), 1nnj(A), 1pji(A), 1pjj(A), 1pm5(A), 1tdz(A), 1xc8(A), 2xzf(A), 2xzu(A), 3c58(A), 4pcz(A), 4pdg(A).

 

 Cluster 4 contains 1 ligand type

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Ligand Description


 
1. Ligand: GOL × 4
Glycerol
PDB codes: 1nnj(A), 1pji(A), 1pjj(A), 1pm5(A).

 

 Cluster 5 contains 1 ligand type

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Ligand Description


 
1. Ligand: GOL × 3
Glycerol
PDB codes: 1pji(A), 1pjj(A), 1pm5(A).

 

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