PDBsum entry 1pgf

Pore analysis for: 1pgf calculated with

MOLE 2.0

PDB id

1pgf

Pores calculated on whole structure

Pores calculated excluding ligands

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8 pores, coloured by radius

9 pores, coloured by radius

9 pores, coloured as in
list below

Pores are connected internal spaces going through the structure. Only pores longer than 25 Å are shown.

Pores

Free R

Length

HPathy

HPhob

Polar

Rel Mut

Residue..type

Ligands

Radius

1

1.13

1.22

26.2

-0.66

-0.32

7.6

83

2

3

4

3

2

1

0

2

2.20

2.52

27.0

-1.09

-0.34

8.4

69

3

3

3

1

2

2

2

3

1.99

2.02

30.0

-1.48

-0.45

13.6

70

4

2

4

1

1

3

2

4

1.31

2.17

31.4

0.09

-0.16

10.4

82

1

2

6

5

2

0

0

NAG 1 C NAG 1 D

5

2.01

2.05

35.2

-1.61

-0.52

14.5

72

5

3

4

1

1

3

2

6

1.92

2.42

35.9

-1.60

-0.42

11.6

71

3

2

6

1

2

3

2

7

2.20

2.36

49.2

-2.35

-0.60

18.1

82

5

1

5

2

1

1

0

8

1.91

2.38

62.5

-1.58

-0.46

10.4

72

4

3

7

3

3

3

2

9

1.13

1.20

69.9

-0.88

-0.23

8.3

76

4

3

7

5

4

2

1

Residue-type_colouring

Positive	Negative	Neutral	Aliphatic	Aromatic	Pro & Gly	Cysteine
H,K,R	D,E	S,T,N,Q	A,V,L,I,M	F,Y,W	P,G	C

Acknowledgement

Pores were calculated by

MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.