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PDBsum entry 1pgf

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Top Page protein ligands Protein-protein interface(s) clefts links
Cleft analysis for: 1pgf PDB id
1pgf
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Binding-site(s)
Binding-surface(s)
Coloured by
 cleft (as in table below)
 closest atom type
 residue type
 residue conservation
Clefts
R1
ratio
Accessible
vertices
Buried
vertices
Average
depth
Residue..type
Ligands
Volume
1 27995.62 14.08 74.09 1 14.86 1 29.41 1 70 42 95 99 61 61 10 NAG 671[A], NAG 672[A], NAG 671[B],
NAG 672[B], HEM 601[A], HEM 
601[B] (125 atoms)
2 1987.88 0.00 67.49 5 11.21 3 8.12 7 9 4 11 5 7 4 0  
3 1964.25 0.00 67.49 4 9.36 5 9.30 2 9 4 11 4 6 5 0  
4 1015.45 0.00 67.85 3 8.95 6 8.30 6 1 3 8 8 3 3 0  
5 1017.56 0.00 69.70 2 9.69 4 8.47 5 1 3 8 9 4 3 0  
6 913.36 0.00 65.36 6 8.19 8 7.71 9 4 4 5 3 4 4 2  
7 882.98 0.00 65.11 7 7.07 9 7.13 10 4 4 4 3 4 3 2  
8 799.45 0.00 61.27 9 11.21 2 8.73 4 2 3 3 3 2 5 0  
9 706.22 0.00 61.99 8 8.63 7 8.10 8 2 3 2 3 2 5 0  
10 1001.95 0.00 60.49 10 5.33 10 8.96 3 6 4 2 7 1 3 1  
 Protein structure

Residue-type_colouring
Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine
H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C
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