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PDBsum entry 1pdv

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Cleft analysis for: 1pdv PDB id
1pdv
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Binding-site(s)
Binding-surface(s)
Coloured by
 cleft (as in table below)
 closest atom type
 residue type
 residue conservation
Clefts
R1
ratio
Accessible
vertices
Buried
vertices
Average
depth
Residue..type
Ligands
Volume
1 747.14 1.27 60.24 8 11.17 1 7.65 3 4 2 0 7 1 0 0  
2 587.67 0.00 70.11 2 8.24 5 0.00 10 3 3 3 4 0 3 2  
3 688.50 0.00 64.98 4 9.31 3 5.61 9 2 2 5 6 1 1 0  
4 404.16 0.00 62.65 6 7.33 7 8.68 2 1 2 1 3 1 4 0  
5 492.75 0.00 62.32 7 5.81 8 7.12 5 4 3 1 4 1 0 0  
6 507.09 0.00 54.67 10 7.33 6 7.26 4 3 3 1 5 0 1 0  
7 330.33 0.00 65.38 3 4.64 10 6.85 7 4 1 0 4 0 1 0  
8 301.22 0.00 79.63 1 11.11 2 9.66 1 3 1 1 3 1 2 0  
9 303.75 0.00 58.58 9 5.77 9 6.25 8 4 1 1 1 1 1 0  
10 329.91 0.00 63.35 5 8.38 4 6.98 6 2 1 1 5 0 4 0  
 Protein structure

Residue-type_colouring
Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine
H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C
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