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PDBsum entry 1pad

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Top Page protein ligands tunnels links
Tunnel analysis for: 1pad calculated with MOLE 2.0 PDB id
1pad
Tunnels calculated on whole structure Tunnels calculated excluding ligands

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4 tunnels, coloured by tunnel radius 4 tunnels, coloured by tunnel radius 4 tunnels, coloured as in
list below
Tunnels
Length
Hydropathy
Hydrophobicity
Polarity
Mutability
Residue..type
Ligands
Radius
1 1.74 7.5 -0.62 0.05 12.1 71 2 1 0 1 1 0 0  
2 1.25 10.8 -0.46 0.14 13.6 64 1 1 0 1 2 0 0  
3 1.44 15.8 0.52 0.26 8.5 70 1 1 1 3 2 0 1  
4 2.91 5.4 -1.64 -0.84 3.3 99 0 0 3 0 0 0 0  

Residue-type_colouring
Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine
H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C

Acknowledgement
Tunnels were calculated by MOLE 2.0 program and visualized using Pymol 0.97rc.
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