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Ligand clusters for UniProt code P00784

Ligand clusters for P00784: Papain OS=Carica papaya PE=1 SV=1

Top 6 (of 11) ligand clusters
Cluster 1.
20 ligand types
23 ligands
Cluster 2.
1 ligand type
1 ligand
Cluster 3.
2 ligand types
2 ligands
Cluster 4.
1 ligand type
1 ligand
Cluster 5.
1 ligand type
1 ligand
Cluster 6.
1 ligand type
2 ligands
Representative protein: 3tnxA  
 

Structures

PDB   Schematic diagram
3tnxA    
4kp9A    
3e1zB    
1khpA    
3lfyA    
 more ...

 

 Cluster 1 contains 20 ligand types

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Ligand Description


 
1. Ligand: ACT × 2
acetic acid
Acetate ion
PDB codes: 4kp9(A),


 
2. Ligand: CYS × 1
l-cysteine
PDB code: 2pad(A).


 
3. Ligand: E6C × 2
N-[1-Hydroxycarboxyethyl-Carbonyl]leucylamino-2-Methyl- Butane
PDB codes: 1pe6(A), 1ppp(A).


 
4. Ligand: LEU-PHE-GLY-0HQ × 2
0HQ=Diazomethane.
PDB codes: 1khp(A), 1khq(A).


 
5. Ligand: 0PC × 1
Nalpha-[(Benzyloxy)carbonyl]-N-[(1s)-3-Chloro-1-Methyl- 2-Oxopropyl]-L-Phenylalaninamide
PDB code: 6pad(A).


 
6. Ligand: ACE-ALA-ALA-PHE-ALA-0QE × 1
ACE=Acetyl group, 0QE=Chloromethane.
PDB code: 1pad(A).


 
7. Ligand: ACE-LEU-LEU-AR7 × 1
ACE=Acetyl group, AR7=Amino{[(4s)-4-Amino-5,5- Dihydroxypentyl]amino}methaniminium.
PDB code: 1pop(A).


 
8. Ligand: ACY × 1
Acetic acid
PDB code: 3e1z(B).


 
9. Ligand: ALD × 1
N-[(Benzyloxy)carbonyl]-L-Leucyl-N-[(2s)-1-Hydroxy-4- Methylpentan-2-Yl]-L-Leucinamide
PDB code: 1bp4(A).


 
10. Ligand: BME × 1
Beta-Mercaptoethanol
PDB code: 1ppd(A).


 
11. Ligand: BU1 × 1
1,4-Butanediol
PDB code: 4kp9(A).


 
12. Ligand: C48 × 1
N1-(1-Dimethylcarbamoyl-2-Phenyl-Ethyl)-2-Oxo-N4-(2- Pyridin-2-Yl-Ethyl)-Succinamide
PDB code: 1cvz(A).


 
13. Ligand: GLY-GLY-THR × 1
PDB code: 2cio(A).


 
14. Ligand: LEU-SER-LEU-ALA × 1
PDB code: 2cio(A).


 
15. Ligand: PHQ-GLY-PHE-GLY-0QE × 1
PHQ=Benzyl chlorocarbonate, 0QE=Chloromethane.
PDB code: 5pad(A).


 
16. Ligand: SBA × 1
Carbobenzyloxy-(L)-Leucinyl-(L)leucinyl methoxymethylketone
PDB code: 1bqi(A).


 
17. Ligand: SER-ASN × 1
PDB code: 3lfy(A).


 
18. Ligand: SIN-GLN-VAL-VAL-ALA-ALA-NIT × 1
SIN=Succinic acid, NIT=4-Nitroaniline.
PDB code: 1pip(A).


 
19. Ligand: TCK × 1
N-[(1s)-5-Amino-1-(Chloroacetyl)pentyl]-4- Methylbenzenesulfonamide
PDB code: 4pad(A).


 
20. Ligand: YXZ × 1
Chloro[n,N-Di(pyridin-2-Yl-Kappan)pentane-1,5- Diamine]ruthenium
PDB code: 4kp9(A).

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 Cluster 2 contains 1 ligand type

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Ligand Description


 
1. Ligand: YXX × 1
Chloro(1-{5-[Di(pyridin-2-Yl-Kappan) amino]pentyl}pyrrolidine-2,5-Dione)ruthenium
PDB code: 4kp9(A).

 

 Cluster 3 contains 2 ligand types

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Ligand Description


 
1. Ligand: ACT × 1
acetic acid
Acetate ion
PDB code: 2cio(A).


 
2. Ligand: GOL × 1
Glycerol
PDB code: 2cio(A).

 

 Cluster 4 contains 1 ligand type

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Ligand Description


 
1. Ligand: GOL × 1
Glycerol
PDB code: 2cio(A).

 

 Cluster 5 contains 1 ligand type

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Ligand Description


 
1. Ligand: SO4 × 1
Sulfate ion
PDB code: 4kp9(A).

 

 Cluster 6 contains 1 ligand type

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Ligand Description


 
1. Ligand: ACT × 2
acetic acid
Acetate ion
PDB codes: 2cio(A), 3ima(A).

 

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