PDBsum entry 1pa5 Go to PDB code:  Tunnel analysis for: 1pa5 calculated with MOLE 2.0 PDB id 1pa5 Tunnels calculated on whole structure Tunnels calculated excluding ligands View options MOLEonline 2.0 manipulation and visualization with HETATM: without HETATM:   6 tunnels, coloured by tunnel radius 6 tunnels, coloured by tunnel radius 6 tunnels, coloured as in list below Tunnels are interior spaces connected with the protein surrounding. Only channels longer than 15 Å are shown. Tunnels Free R Length HPathy HPhob Polar Rel Mut Residue..type Ligands Radius 1 1.49 1.52 15.3 0.38 0.33 8.3 74 2 1 2 3 3 0 0   2 1.27 1.27 15.1 -0.94 0.10 13.9 77 1 1 2 0 3 0 0   3 1.18 1.43 15.8 -0.40 -0.11 9.9 84 0 1 1 1 1 0 0   4 1.61 1.72 17.4 -0.69 -0.18 14.4 74 1 2 2 1 0 1 2   5 1.35 1.36 18.3 -0.50 -0.39 6.1 81 0 1 3 3 0 1 0   6 1.61 1.72 24.8 -1.27 -0.41 16.0 78 1 2 2 1 0 1 2   Residue-type_colouring Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C Acknowledgement Tunnels were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.