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Ligand clusters for UniProt code P03176

Ligand clusters for P03176: Thymidine kinase OS=Human herpesvirus 1 (strain 17) GN=TK PE=1 SV=4

4 ligand clusters
Cluster 1.
32 ligand types
76 ligands
Cluster 2.
1 ligand type
8 ligands
Cluster 3.
1 ligand type
1 ligand
Cluster 4.
1 ligand type
1 ligand
Representative protein: 1p7cB  
 

Structures

PDB   Schematic diagram
1p7cB    
2ki5A    
1e2kA    
3vtkA    
1ki6A    
 more ...

 

 Cluster 1 contains 32 ligand types (of which only 20 are listed. Click for all)

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Ligand Description


 
1. Ligand: THM × 3
Thymidine
PDB codes: 1e2j(A), 1kim(A), 1p7c(B).


 
2. Ligand: AC2 × 1
acyclovir
9-Hyroxyethoxymethylguanine
PDB code: 2ki5(A).


 
3. Ligand: GA2 × 1
ganciclovir
9-(1,3-Dihydroxy-Propoxymethane)guanine
PDB code: 1ki2(A).


 
4. Ligand: ID2 × 1
idoxuridine
5-Iododeoxyuridine
PDB code: 1ki7(A).


 
5. Ligand: PE2 × 1
penciclovir
9-(4-Hydroxy-3-(Hydroxymethyl)but-1-Yl)guanine
PDB code: 1ki3(A).


 
6. Ligand: AHU × 1
1',5'-Anhydro-2',3'-Dideoxy-2'-(5-Iodouracil-1-Yl)-D- Ababino-Hexitol
PDB code: 1ki6(A).


 
7. Ligand: BVD × 1
5-Bromovinyldeoxyuridine
PDB code: 1ki8(A).


 
8. Ligand: TMC × 3
1-[4-Hydroxy-5-(Hydroxymethyl)bicyclo[3.1.0] hex-2-Yl]-5-Methylpyrimidine-2,4(1h,3h)- Dione
PDB codes: 1e2k(A), 1e2l(A).


 
9. Ligand: SCT × 1
(South)-Methanocarba-Thymidine
PDB code: 1of1(A).


 
10. Ligand: BTD × 1
5-Bromothienyldeoxyuridine
PDB code: 1ki4(A).


 
11. Ligand: HPT × 1
6-Hydroxypropylthymine
PDB code: 1e2m(A).


 
12. Ligand: CCV × 1
6-[3-Hydroxy-2-(Hydroxymethyl)propyl]-5- Methyl-2,4(1h,3h)-Pyrimidinedione
PDB code: 1e2p(A).


 
13. Ligand: RCA × 1
6-{[4-(Hydroxymethyl)-5-Methyl-2,6- Dioxohexahydropyrimidin-5-Yl]methyl}-5- Methylpyrimidine-
2,4(1h,3h)-Dione
PDB code: 1e2n(A).


 
14. Ligand: T5A × 1
P1-(5'-Adenosyl)p5-(5'-Thymidyl)pentaphosphate
PDB code: 1p7c(A).


 
15. Ligand: BPG × 1
9-(4-Hydroxybutyl)-N2-Phenylguanine
PDB code: 1qhi(A).


 
16. Ligand: SO4 × 38
Sulfate ion
PDB codes: 1e2h(A), 1e2i(A), 1e2j(A), 1e2k(A), 1e2l(A), 1e2m(A), 1e2n(A), 1e2p(A), 1ki2(A), 1ki3(A), 1ki4(A), 1ki6(A), 1ki7(A), 1ki8(A), 1kim(A), 1of1(A), 1p7c(B), 1qhi(A), 2ki5(A), 3f0t(A), 3rdp(A), 4ivp(A), 4ivq(A), 4ivr(A), 4jbx(A), 4jby(A), 4oql(A), 4oqm(A), 4oqn(A), 4oqx(A),


 
17. Ligand: THM × 1
Thymidine
PDB code: 2vtk(A).


 
18. Ligand: ADP × 3
Adenosine-5'-Diphosphate
PDB codes: 1vtk(A), 2vtk(A), 3vtk(A).


 
19. Ligand: APS-ARP × 2
APS=9-Hydroxypropyladenine, S-Isomer, ARP=9-Hydroxypropyladenine, R-Isomer.
PDB codes: 1e2i(A),


 
20. Ligand: 5IU × 1
5-Iodo-2'-Deoxyuridine-5'-Monophosphate
PDB code: 3vtk(A).

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 Cluster 2 contains 1 ligand type

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Ligand Description


 
1. Ligand: SO4 × 8
Sulfate ion
PDB codes: 3f0t(A), 4ivp(A), 4jbx(A), 4jby(A), 4oql(A), 4oqm(A), 4oqn(A), 4oqx(A).

 

 Cluster 3 contains 1 ligand type

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Ligand Description


 
1. Ligand: SO4 × 1
Sulfate ion
PDB code: 4ivq(A).

 

 Cluster 4 contains 1 ligand type

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Ligand Description


 
1. Ligand: SO4 × 1
Sulfate ion
PDB code: 4oqm(A).

 

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