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PDBsum entry 1p3p
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Top Page protein dna_rna Protein-protein interface(s) pores links
Pore analysis for: 1p3p calculated with MOLE 2.0 PDB id
1p3p
Pores calculated on whole structure Pores calculated excluding ligands
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30 pores, coloured by radius 30 pores, coloured by radius 30 pores, coloured as in
list below
Pores are connected internal spaces going through the structure. Only pores longer than 25 Å are shown.
Pores
Free R
Length
HPathy
HPhob
Polar
Rel Mut
Residue..type
Ligands
Radius
1 3.47 3.47 31.7 -1.68 -0.68 18.8 89 3 0 2 0 0 0 0  DC 9 I DC 10 I DA 11 I DC 12 I DT 92 I DT 93 I DG
204 J DG 205 J DC 206 J DG 280 J DG 281 J DG 283
J DG 284 J DA 285 J DT 286 J DA 287 J DT 288 J
2 3.55 3.87 33.7 -1.58 -0.68 19.4 85 3 1 1 1 0 0 0  DA 7 I DG 18 I DT 92 I DG 205 J DC 206 J DG 280 J
DG 281 J
3 3.66 3.84 34.9 -1.92 -0.68 22.0 89 4 1 4 1 0 0 0  DC 9 I DC 10 I DA 11 I DC 12 I DG 18 I DT 92 I DA
279 J DG 280 J DG 283 J DG 284 J DA 285 J DT 286
J DA 287 J DT 288 J
4 2.73 2.78 36.3 -1.86 -0.58 19.0 92 5 0 5 1 1 0 0  DG 18 I DA 102 I DA 187 J DA 188 J DT 191 J DC
195 J
5 2.73 2.77 38.7 -1.71 -0.60 18.0 94 5 1 6 3 1 0 0  DT 20 I DT 21 I DT 23 I DA 102 I DA 187 J DA 188
J DT 191 J DG 267 J DT 269 J
6 3.25 3.25 39.0 -1.84 -0.65 21.4 75 4 0 0 0 0 0 0  DG 39 I DG 40 I DA 42 I DA 43 I DA 173 J DA 174 J
DA 248 J DG 249 J DT 250 J DT 251 J DT 252 J
7 2.02 2.02 41.5 -2.27 -0.49 28.2 77 4 1 0 1 0 1 0  DG 59 I DC 60 I DA 61 I DT 62 I DG 63 I DT 64 I D
A 133 I DG 134 I DG 135 I DA 153 J DT 154 J DC
155 J DC 156 J DA 188 J DT 191 J DA 229 J DC 230
J DA 231 J
8 3.06 3.13 43.4 -2.26 -0.59 22.6 78 4 0 1 0 0 1 0  DA 7 I DT 8 I DC 9 I DC 10 I DG 205 J DC 206 J DG
280 J DG 281 J DT 282 J DT 288 J DT 289 J
9 3.06 3.13 44.1 -2.13 -0.61 21.1 84 4 0 2 0 0 1 0  DC 9 I DC 10 I DT 92 I DT 93 I DG 204 J DG 205 J
DC 206 J DG 280 J DG 281 J DT 288 J DT 289 J
10 3.28 3.28 50.6 -2.04 -0.40 22.3 76 4 0 0 1 1 0 0  DG 39 I DA 110 I DA 111 I DT 112 I DA 113 I DC
114 I DC 116 I DA 173 J DA 174 J DA 175 J DA 176
J DG 177 J DT 178 J DG 179 J DT 180 J DT 250 J DT
251 J DT 252 J
11 2.92 3.05 55.7 -0.37 -0.39 9.2 94 3 0 6 5 0 0 0  DG 18 I DT 20 I DT 21 I DT 23 I DC 89 I DT 90 I
DT 91 I DT 92 I DT 93 I DC 195 J DT 198 J DC 199
J DA 201 J DT 208 J DG 209 J DG 267 J DT 269 J
12 1.66 1.66 57.2 -1.08 -0.51 13.4 87 3 1 6 2 0 1 0  DG 18 I DC 89 I DT 90 I DT 91 I DT 92 I DT 93 I
DC 195 J DT 198 J DC 199 J DA 201 J DT 208 J
13 1.63 1.79 59.3 -1.24 -0.55 13.4 75 4 0 0 1 0 1 0  DA 4 I DA 5 I DT 6 I DA 85 I DG 214 J DC 215 J DG
216 J DT 288 J DT 289 J DA 291 J DT 292 J
14 3.06 3.14 60.3 -1.94 -0.67 19.9 90 5 1 6 1 0 1 0  DC 9 I DC 10 I DG 18 I DT 92 I DC 195 J DA 279 J
DG 280 J DT 288 J DT 289 J
15 3.25 3.25 64.5 -2.40 -0.40 27.6 77 10 0 0 1 1 0 0  DG 39 I DG 40 I DA 42 I DA 43 I DA 110 I DA 111 I
DT 112 I DA 113 I DC 114 I DC 116 I DA 174 J DA
175 J DA 176 J DG 177 J DT 178 J DG 179 J DT 180
J DA 248 J DG 249 J DT 250 J
16 3.16 3.35 69.2 -1.86 -0.45 21.7 87 10 0 2 2 1 0 0  DA 29 I DA 30 I DG 31 I DT 32 I DG 33 I DA 41 I D
A 42 I DA 102 I DG 103 I DT 104 I DG 185 J DG 186
J DA 187 J DA 188 J DT 191 J DA 256 J DA 257 J DT
258 J DC 260 J DA 261 J
17 2.45 2.45 75.9 -2.14 -0.36 25.6 81 12 2 6 2 4 1 0  DC 9 I DC 49 I DT 123 I DA 124 I DA 248 J DT 288
J DT 289 J
18 3.12 3.16 79.3 -1.74 -0.47 19.6 91 13 1 7 5 2 0 0  DT 20 I DT 21 I DT 23 I DA 29 I DA 30 I DG 31 I
DT 32 I DG 33 I DA 41 I DA 42 I DG 185 J DA 256 J
DA 257 J DT 258 J DC 260 J DA 261 J DG 267 J DT
269 J
19 2.56 3.13 82.2 -1.62 -0.25 18.8 86 10 3 13 6 6 3 0  DT 20 I DT 21 I DT 23 I DC 49 I DT 123 I DA 124 I
DA 248 J DG 267 J DT 269 J
20 3.13 3.12 83.6 -1.84 -0.40 21.2 89 13 1 6 3 2 0 0  DG 18 I DA 29 I DA 30 I DG 31 I DT 32 I DG 33 I D
A 41 I DA 42 I DA 102 I DG 185 J DC 195 J DA 256
J DA 257 J DT 258 J DC 260 J DA 261 J
21 2.51 3.22 86.8 -1.73 -0.20 21.1 84 11 3 12 4 6 3 0  DG 18 I DC 49 I DA 102 I DT 123 I DA 124 I DC 195
J DA 248 J
22 2.96 3.32 90.3 -1.78 -0.73 21.4 83 10 2 2 0 0 0 0  DA 29 I DT 38 I DG 39 I DG 40 I DA 102 I DG 103 I
DT 104 I DA 113 I DC 114 I DA 173 J DA 174 J DA
175 J DT 184 J DG 185 J DG 186 J DA 187 J DA 188
J DT 191 J DT 250 J DT 251 J DT 252 J DA 259 J
23 2.94 2.96 91.3 -1.95 -0.57 22.4 86 14 3 6 4 2 0 0  DT 20 I DT 21 I DT 23 I DA 29 I DT 38 I DA 110 I
DA 111 I DT 112 I DA 113 I DC 114 I DG 177 J DT
178 J DG 179 J DT 180 J DT 184 J DG 185 J DA 259
J DG 267 J DT 269 J
24 2.81 3.10 95.6 -2.11 -0.49 24.6 84 14 3 5 2 2 0 0  DG 18 I DA 29 I DT 38 I DA 102 I DA 110 I DA 111
I DT 112 I DA 113 I DC 114 I DG 177 J DT 178 J DG
179 J DT 180 J DT 184 J DG 185 J DC 195 J DA 259 J
25 2.89 2.93 100.3 -1.67 -0.68 19.3 89 12 3 7 3 1 0 0  DT 20 I DT 21 I DT 23 I DA 29 I DT 38 I DG 39 I
DG 40 I DA 113 I DC 114 I DA 173 J DA 174 J DA
175 J DT 184 J DG 185 J DT 250 J DT 251 J DT 252
J DA 259 J DG 267 J DT 269 J
26 1.85 2.37 101.2 -2.21 -0.59 23.6 84 14 6 7 4 0 2 0  DC 9 I DA 133 I DG 134 I DC 155 J DC 156 J DC 158
J DC 159 J DT 288 J DT 289 J
27 2.83 3.13 104.7 -1.78 -0.62 20.9 87 12 3 6 1 1 0 0  DG 18 I DA 29 I DT 38 I DG 39 I DG 40 I DA 102 I
DA 113 I DC 114 I DA 173 J DA 174 J DA 175 J DT
184 J DG 185 J DC 195 J DT 250 J DT 251 J DT 252
J DA 259 J
28 1.85 2.36 107.9 -2.23 -0.57 24.0 84 16 6 6 4 0 3 0  DC 9 I DT 142 I DT 143 I DG 144 I DC 155 J DT 288
J DT 289 J
29 1.39 1.49 120.8 -1.41 -0.53 18.0 75 9 0 0 5 0 2 0  DA 4 I DA 5 I DT 6 I DG 68 I DC 69 I DG 70 I DG
71 I DG 78 I DC 79 I DG 81 I DA 85 I DG 144 I DA
147 J DG 214 J DC 215 J DG 216 J DG 217 J DA 218
J DA 219 J DT 220 J DT 221 J DA 291 J DT 292 J
30 1.90 2.17 151.9 -2.09 -0.41 23.8 81 23 6 10 6 2 4 0  DG 18 I DA 102 I DT 142 I DT 143 I DG 144 I DC
155 J DC 195 J

Residue-type_colouring
Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine
H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C

Acknowledgement
Pores were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.
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