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PDBsum entry 1p3o
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Top Page protein dna_rna Protein-protein interface(s) pores links
Pore analysis for: 1p3o calculated with MOLE 2.0 PDB id
1p3o
Pores calculated on whole structure Pores calculated excluding ligands
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29 pores, coloured by radius 29 pores, coloured by radius 29 pores, coloured as in
list below
Pores are connected internal spaces going through the structure. Only pores longer than 25 Å are shown.
Pores
Free R
Length
HPathy
HPhob
Polar
Rel Mut
Residue..type
Ligands
Radius
1 3.53 3.78 27.4 -1.97 -0.74 24.1 77 4 1 0 0 0 0 0  DA 7 I DG 18 I DT 92 I DG 205 J DC 206 J DG 280 J
DG 281 J
2 2.05 2.18 29.6 -2.51 -0.60 27.9 86 4 0 2 0 0 0 0  DC 10 I DC 12 I DC 13 I DC 206 J DA 279 J DG 280
J DG 281 J
3 2.78 2.78 35.3 -1.26 -0.53 18.9 78 3 0 0 1 0 0 0  DG 71 I DA 72 I DA 73 I DT 74 I DA 213 J DG 214 J
DC 215 J DG 216 J DA 218 J DA 219 J DT 220 J DA
291 J DT 292 J
4 1.31 1.36 35.6 -1.57 -0.63 15.7 74 2 0 0 0 0 1 0  DC 66 I DA 67 I DG 68 I DC 69 I DG 70 I DG 71 I D
A 72 I DA 145 I DT 146 I DG 224 J DC 225 J DT 226
J DG 227 J DA 228 J
5 1.67 1.67 36.2 -0.66 -0.83 7.3 77 1 1 0 0 0 0 0  DA 28 I DA 29 I DA 30 I DG 31 I DT 32 I DG 33 I
DG 103 I DT 104 I DT 105 I DT 106 I DT 263 J DT
264 J DT 265 J DT 266 J DG 267 J DG 268 J
6 2.04 2.20 36.6 -2.16 -0.71 22.2 84 5 1 3 0 0 0 0  DC 10 I DC 12 I DC 13 I DG 18 I DT 92 I DA 279 J
DG 280 J
7 3.42 3.42 39.7 -1.70 -0.56 18.6 92 6 1 6 2 1 0 0  DG 18 I DA 29 I DA 102 I DG 185 J DC 195 J DA 259
J
8 2.53 2.76 40.2 -1.45 -0.69 16.6 79 3 1 2 1 0 0 0  DT 52 I DC 53 I DG 59 I DG 134 I DG 135 I DA 153
J DG 164 J DT 236 J DT 237 J DT 239 J DG 240 J
9 3.44 3.44 42.1 -1.50 -0.60 16.3 90 5 1 5 2 1 0 0  DG 18 I DA 28 I DA 29 I DA 102 I DG 103 I DT 104
I DT 105 I DC 195 J
10 1.30 1.36 44.7 -1.15 -0.40 16.5 79 5 0 0 3 0 1 0  DC 66 I DA 67 I DG 68 I DC 69 I DG 70 I DA 145 I
DT 146 I DA 219 J DG 227 J DA 228 J
11 3.08 3.24 48.5 -2.03 -0.63 21.1 84 4 0 2 0 0 1 0  DA 7 I DC 9 I DC 10 I DG 205 J DC 206 J DA 279 J
DG 280 J DG 281 J DT 288 J DT 289 J
12 2.65 2.66 52.4 -2.32 -0.50 27.5 79 8 3 0 2 1 0 0  DT 112 I DA 113 I DC 114 I DA 115 I DA 176 J DT
178 J DG 179 J DT 180 J DT 184 J DG 185 J DA 259
J DC 260 J
13 3.08 3.24 58.1 -1.86 -0.64 19.3 88 5 1 5 1 0 1 0  DC 9 I DC 10 I DG 18 I DT 92 I DC 195 J DA 279 J
DG 280 J DT 288 J DT 289 J
14 2.44 2.44 58.6 -1.34 -0.60 12.9 90 6 0 7 3 1 0 0  DA 41 I DA 42 I DA 43 I DC 49 I DT 52 I DC 53 I
DG 164 J DT 237 J DT 239 J DG 240 J DA 241 J DA
248 J DA 256 J
15 2.64 2.66 64.2 -2.26 -0.42 26.1 78 11 0 0 2 1 0 0  DG 39 I DG 40 I DA 41 I DA 42 I DA 43 I DT 112 I
DA 113 I DC 114 I DA 115 I DC 116 I DA 174 J DA
175 J DA 176 J DT 178 J DG 179 J DT 180 J DA 248
J DG 249 J DT 250 J DA 256 J
16 2.33 2.64 66.4 -2.62 -0.46 32.2 76 16 4 2 3 2 0 0  DA 28 I DA 29 I DG 103 I DT 104 I DT 105 I DT 106
I
17 3.01 3.10 68.3 -1.56 -0.69 15.8 91 7 1 6 2 1 0 0  DA 41 I DA 42 I DA 43 I DC 49 I DG 59 I DG 134 I
DG 135 I DA 153 J DG 164 J DT 239 J DG 240 J DA
248 J DA 256 J
18 2.15 2.25 70.2 -2.47 -0.47 30.8 75 17 4 2 5 3 2 0  DA 28 I DA 29 I DG 103 I DT 104 I DT 105 I DT 106
I
19 1.13 1.13 82.8 -1.52 -0.55 15.8 74 5 1 2 0 1 2 0  DG 59 I DC 66 I DA 133 I DG 134 I DG 135 I DT 142
I DT 143 I DG 144 I DA 145 I DT 146 I DA 150 J DA
151 J DA 153 J DT 154 J DC 155 J DC 156 J
20 1.86 2.11 84.2 -1.35 -0.48 17.9 79 10 1 2 5 0 3 0  DG 59 I DC 69 I DG 70 I DA 133 I DG 134 I DG 135
I DT 142 I DT 143 I DA 153 J DT 154 J DC 155 J DC
156 J DA 219 J
21 2.53 2.53 87.9 -1.51 -0.64 16.9 87 10 0 5 1 0 0 0  DG 39 I DC 49 I DT 52 I DC 53 I DT 112 I DA 113 I
DC 114 I DA 115 I DC 116 I DT 123 I DG 164 J DA
174 J DA 175 J DA 176 J DT 178 J DG 179 J DT 180
J DT 237 J DT 239 J DG 240 J DA 241 J DG 249 J
22 1.99 2.89 91.6 -2.41 -0.48 30.3 77 20 4 2 5 2 3 0  DG 39 I DG 40 I DA 41 I DA 42 I DA 43 I DA 175 J
DA 248 J DG 249 J DT 250 J DA 256 J
23 2.12 2.93 95.0 -2.48 -0.48 31.1 78 22 4 2 6 2 3 0  DG 39 I DT 112 I DA 113 I DC 114 I DA 115 I DC
116 I DA 176 J DT 178 J DG 179 J DT 180 J
24 2.43 2.43 93.5 -1.35 -0.73 15.5 88 8 3 6 1 0 0 0  DG 39 I DC 49 I DT 52 I DC 53 I DA 113 I DT 123 I
DG 164 J DA 174 J DA 175 J DT 184 J DG 185 J DT
237 J DT 239 J DG 240 J DA 241 J DG 249 J DA 259
J DC 260 J
25 2.00 2.88 94.8 -2.44 -0.41 29.8 76 20 2 1 4 2 1 0  DG 39 I DT 112 I DA 113 I DC 114 I DA 115 I DC
116 I DA 176 J DT 178 J DG 179 J DT 180 J
26 2.00 2.89 97.2 -2.64 -0.48 32.6 78 18 2 2 2 1 1 0  DG 39 I DG 40 I DA 41 I DA 42 I DA 43 I DA 175 J
DA 248 J DG 249 J DT 250 J DA 256 J
27 2.65 2.71 97.6 -1.58 -0.72 17.7 88 10 1 4 0 0 0 0  DG 39 I DC 49 I DG 59 I DT 112 I DA 113 I DC 114
I DA 115 I DC 116 I DT 123 I DG 134 I DG 135 I DA
153 J DG 164 J DA 174 J DA 175 J DA 176 J DT 178
J DG 179 J DT 180 J DT 239 J DG 240 J DG 249 J
28 2.73 2.71 103.3 -1.50 -0.78 17.4 89 9 4 5 0 0 0 0  DG 39 I DC 49 I DG 59 I DA 113 I DT 123 I DG 134
I DG 135 I DA 153 J DG 164 J DA 174 J DA 175 J DT
184 J DG 185 J DT 239 J DG 240 J DG 249 J DA 259
J DC 260 J
29 2.79 2.79 108.3 -2.33 -0.45 31.5 82 11 6 4 3 1 1 0  DG 71 I DA 72 I DA 73 I DA 218 J DA 219 J DT 220 J

Residue-type_colouring
Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine
H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C

Acknowledgement
Pores were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.
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