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PDBsum entry 1p3l
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Top Page protein dna_rna Protein-protein interface(s) pores links
Pore analysis for: 1p3l calculated with MOLE 2.0 PDB id
1p3l
Pores calculated on whole structure Pores calculated excluding ligands
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28 pores, coloured by radius 28 pores, coloured by radius 28 pores, coloured as in
list below
Pores are connected internal spaces going through the structure. Only pores longer than 25 Å are shown.
Pores
Free R
Length
HPathy
HPhob
Polar
Rel Mut
Residue..type
Ligands
Radius
1 3.59 3.59 27.7 -2.12 -0.64 24.9 83 4 0 1 0 0 0 0  DC 10 I DA 11 I DC 12 I DC 13 I DT 92 I DT 93 I
DG 204 J DG 205 J DC 206 J DG 277 J DC 278 J DA
279 J DG 280 J DG 281 J
2 3.60 3.60 31.8 -2.33 -0.62 27.2 83 4 0 1 0 0 0 0  DA 7 I DC 10 I DA 11 I DC 12 I DC 13 I DG 205 J
DC 206 J DG 277 J DC 278 J DA 279 J DG 280 J DG
281 J
3 3.89 3.91 32.0 -1.80 -0.66 20.7 74 4 0 1 0 0 0 0  DG 59 I DG 131 I DC 132 I DA 133 I DG 134 I DG
135 I DT 136 I DA 153 J DT 154 J DC 155 J DC 156
J DC 158 J DC 159 J DA 231 J
4 2.91 3.02 33.4 -1.93 -0.61 18.7 94 5 0 6 1 1 0 0  DT 34 I DA 41 I DA 42 I DC 49 I DA 248 J DA 255 J
DA 256 J
5 2.89 2.93 36.9 -1.81 -0.60 18.6 91 5 0 5 2 1 0 0  DG 18 I DA 102 I DA 187 J DA 188 J DT 191 J DC
195 J
6 2.90 3.00 38.5 -1.82 -0.61 19.5 97 4 0 7 1 1 0 0  DG 39 I DG 40 I DC 49 I DA 174 J DA 175 J DA 248
J DG 249 J DT 250 J
7 3.80 4.19 44.8 -1.49 -0.76 16.2 93 3 1 3 0 0 0 0  DC 49 I DG 59 I DG 134 I DG 135 I DA 153 J DG 164
J DA 231 J DT 239 J DG 240 J
8 2.17 3.02 50.5 -2.55 -0.45 32.8 76 14 1 0 1 1 1 0  DA 175 J
9 2.62 3.42 55.9 -2.24 -0.64 27.1 81 8 2 1 1 1 0 0  DA 29 I DA 30 I DG 31 I DT 32 I DT 34 I DT 38 I
DG 39 I DA 113 I DC 114 I DT 184 J DG 185 J DA
255 J DA 256 J DA 257 J DT 258 J DA 259 J DC 260
J DA 261 J
10 3.16 3.16 57.4 -2.80 -0.50 33.7 81 10 1 1 1 1 0 0  DA 28 I DA 29 I DA 30 I DG 31 I DT 32 I DT 34 I D
A 102 I DG 103 I DT 104 I DG 185 J DG 186 J DA
187 J DA 188 J DT 191 J DA 256 J DA 257 J DT 258
J DC 260 J DA 261 J
11 1.70 1.70 57.2 -0.89 -0.79 9.1 93 4 1 3 0 0 0 0  DG 18 I DA 28 I DA 29 I DA 30 I DG 31 I DG 103 I
DC 195 J DT 265 J DT 266 J DG 267 J DG 268 J DT
269 J DA 270 J
12 1.71 1.71 58.2 -1.37 -0.75 16.0 80 6 1 0 0 0 0 0  DA 28 I DA 29 I DA 30 I DG 31 I DA 102 I DG 103 I
DT 104 I DG 186 J DA 187 J DA 188 J DT 191 J DT
265 J DT 266 J DG 267 J DG 268 J
13 3.82 4.20 59.9 -1.58 -0.73 17.8 87 7 1 4 0 0 0 0  DC 49 I DG 59 I DC 132 I DA 133 I DG 134 I DG 135
I DC 155 J DC 156 J DC 158 J DC 159 J DG 164 J DT
239 J DG 240 J
14 2.77 3.43 61.1 -1.92 -0.73 23.3 84 9 2 2 0 0 0 0  DA 28 I DA 29 I DT 38 I DG 39 I DA 102 I DG 103 I
DT 104 I DA 113 I DC 114 I DT 184 J DG 185 J DG
186 J DA 187 J DA 188 J DT 191 J DA 259 J
15 2.21 2.99 66.6 -2.14 -0.46 24.5 85 12 2 6 2 2 1 0  DC 49 I
16 2.54 2.53 68.0 -2.21 -0.45 24.8 85 12 3 7 2 2 0 0  DG 18 I DC 195 J
17 2.79 2.89 68.7 -2.05 -0.55 26.1 81 9 7 3 4 1 1 0  DA 188 J DT 191 J
18 1.25 1.24 70.4 -1.74 -0.41 20.6 74 7 0 0 0 1 0 0  DA 4 I DA 5 I DT 6 I DA 7 I DT 8 I DC 9 I DC 10 I
DA 11 I DC 12 I DC 13 I DC 84 I DG 277 J DC 278 J
DG 280 J DT 288 J DT 289 J DG 290 J DA 291 J
19 1.68 1.68 75.1 -1.88 -0.65 22.3 83 9 2 1 1 1 0 0  DA 28 I DA 29 I DA 30 I DG 31 I DT 32 I DG 33 I
DT 34 I DG 185 J DA 256 J DA 257 J DT 258 J DC
260 J DA 261 J DT 265 J DT 266 J DG 267 J DG 268 J
20 3.21 3.17 77.4 -1.96 -0.62 22.7 87 11 1 4 1 1 0 0  DG 18 I DA 28 I DA 29 I DA 30 I DG 31 I DT 32 I
DT 34 I DG 103 I DG 185 J DC 195 J DA 256 J DA
257 J DT 258 J DC 260 J DA 261 J DT 269 J DA 270 J
21 1.72 1.72 78.8 -1.38 -0.79 16.6 86 8 3 2 0 0 0 0  DA 28 I DA 29 I DA 30 I DG 31 I DG 33 I DT 38 I
DG 39 I DA 113 I DC 114 I DT 184 J DG 185 J DA
259 J DT 265 J DT 266 J DG 267 J DG 268 J
22 2.24 2.36 81.8 -1.76 -0.32 19.1 88 11 3 14 4 5 2 0  DG 18 I DC 49 I DC 195 J
23 1.68 1.68 81.0 -1.97 -0.55 24.2 76 13 5 1 1 2 0 0  DA 28 I DA 29 I DA 30 I DG 31 I DG 33 I DT 265 J
DT 266 J DG 267 J DG 268 J
24 1.27 1.25 81.6 -1.61 -0.50 18.4 76 6 0 0 0 1 0 0  DA 4 I DA 5 I DT 6 I DA 7 I DT 8 I DC 9 I DC 10 I
DC 84 I DG 205 J DC 206 J DG 280 J DG 281 J DT
282 J DT 288 J DT 289 J DG 290 J DA 291 J
25 2.66 3.42 81.0 -1.48 -0.76 17.2 90 10 2 5 0 0 0 0  DG 18 I DA 28 I DA 29 I DT 38 I DG 39 I DG 103 I
DA 113 I DC 114 I DT 184 J DG 185 J DC 195 J DA
259 J DT 269 J DA 270 J
26 2.58 3.63 90.5 -2.62 -0.42 32.9 77 19 3 1 2 3 0 0  DA 29 I DA 30 I DG 31 I DT 32 I DT 34 I DG 185 J
DA 256 J DA 257 J DT 258 J DC 260 J DA 261 J
27 1.97 2.30 107.2 -1.48 -0.48 20.7 78 11 0 0 4 0 2 0  DG 59 I DC 69 I DG 71 I DA 72 I DA 73 I DT 74 I
DC 84 I DA 85 I DG 135 I DT 136 I DT 143 I DA 153
J DT 154 J DC 155 J DC 212 J DA 213 J DG 214 J DC
215 J DG 216 J DG 217 J DA 218 J DA 219 J DT 220
J DA 231 J DA 291 J DT 292 J
28 1.87 2.14 119.8 -1.50 -0.48 19.8 77 13 1 2 4 0 3 0  DC 69 I DG 71 I DA 72 I DA 73 I DT 74 I DC 84 I D
A 85 I DC 132 I DA 133 I DG 134 I DT 142 I DT 143
I DC 155 J DC 156 J DC 158 J DC 159 J DC 212 J DA
213 J DG 214 J DC 215 J DG 216 J DG 217 J DA 218
J DA 219 J DT 220 J DA 291 J DT 292 J

Residue-type_colouring
Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine
H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C

Acknowledgement
Pores were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.
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