 |
PDBsum entry 1oyv
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
 |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Pore analysis for: 1oyv calculated with  MOLE 2.0
|
PDB id
|
|
|
|
1oyv
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Pores calculated on whole structure |
|
Pores calculated excluding ligands
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
 |
|
|
|
|
|
4 pores,
coloured by radius |
|
4 pores,
coloured by radius
|
4 pores,
coloured as in
list below
|
|
|
|
|
|
Pores are connected internal spaces going through the structure. Only pores longer than 25 Å are shown. |
|
|
|
|
|
|
|
Free R
|
|
|
|
|
|
|
Length
|
|
|
|
|
|
|
HPathy
|
|
|
|
|
|
|
HPhob
|
|
|
|
|
|
|
Polar
|
|
|
|
|
|
|
Rel Mut
|
|
|
|
|
|
|
Residue..type
|
|
|
|
|
|
|
Ligands
|
|
|
|
|
|
|
 |
Radius |
 |
1 |
 |
2.02 |
2.06 |
27.8 |
-0.51 |
-0.40 |
6.9 |
87 |
|
2 |
1 |
3 |
1 |
2 |
1 |
0 |
|
|
 |
|
2 |
 |
1.40 |
1.40 |
34.8 |
-0.52 |
-0.48 |
6.5 |
91 |
0 |
1 |
6 |
3 |
2 |
2 |
0 |
|
|
3 |
 |
2.02 |
2.07 |
56.5 |
-1.38 |
-0.52 |
10.6 |
93 |
2 |
3 |
9 |
1 |
2 |
2 |
0 |
|
 |
4 |
 |
1.40 |
1.40 |
58.7 |
-0.95 |
-0.49 |
8.1 |
88 |
2 |
2 |
7 |
3 |
3 |
2 |
1 |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
 |
|
|
 |
Residue-type_colouring |
 |
|
|
|
Positive
|
Negative
|
Neutral
|
Aliphatic
|
Aromatic
|
Pro & Gly
|
Cysteine
|
|
H,K,R
|
D,E
|
S,T,N,Q
|
A,V,L,I,M
|
F,Y,W
|
P,G
|
C
|
|
|
|
MOLE 2.0 program