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PDBsum entry 1owr

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Top Page protein dna_rna Protein-protein interface(s) pores links
Pore analysis for: 1owr calculated with MOLE 2.0 PDB id
1owr
Pores calculated on whole structure Pores calculated excluding ligands

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20 pores, coloured by radius 20 pores, coloured by radius 20 pores, coloured as in
list below
Pores are connected internal spaces going through the structure. Only pores longer than 25 Å are shown.
Pores
Free R
Length
HPathy
HPhob
Polar
Rel Mut
Residue..type
Ligands
Radius
1 2.78 2.78 26.5 -1.79 -0.52 18.0 82 2 3 4 3 2 0 0  DG 4006 A DG 4007 A
2 1.55 1.55 34.3 -1.10 -0.70 7.0 80 5 0 3 1 0 1 0  DG 4006 A DG 4007 A DA 4008 A DA 4009 A DA 4010 A
DT 5007 B DA 5013 B
3 2.21 3.61 37.1 -1.15 -0.49 12.1 90 6 1 6 2 0 1 0  
4 2.88 3.04 40.3 -1.25 -0.56 9.9 80 3 1 4 3 1 1 0  DA 4009 A DA 4010 A DT 5007 B DA 5013 B
5 2.61 2.87 42.6 -1.60 -0.62 13.6 87 4 2 6 1 0 1 0  DG 4006 A DT 4005 E DG 4006 E
6 1.44 1.49 43.2 -1.29 -0.47 9.9 87 5 1 7 2 0 3 0  
7 1.49 1.68 43.5 -2.04 -0.72 22.0 86 6 5 4 2 0 1 0  
8 2.73 2.96 46.7 -1.39 -0.52 10.2 82 2 1 5 3 1 1 0  DA 4009 A DA 4010 A DA 4011 A DC 5003 B DT 5004 B
DA 5005 B DT 5006 B DT 5007 B
9 1.20 1.18 52.1 -0.95 -0.31 22.2 77 5 4 1 4 0 2 0  
10 2.24 2.24 54.7 -2.81 -0.62 26.6 82 10 4 5 1 0 3 0  DG 4006 A
11 2.40 2.58 54.8 -0.17 0.00 11.2 78 3 2 0 4 1 2 0  DA 4012 E DT 4013 E DA 4014 E DG 4015 E DT 5010 F
12 1.73 1.93 58.0 -1.22 -0.30 16.2 85 8 1 6 3 1 1 0  DT 4005 C DG 4006 C DT 4002 E DG 4003 E
13 1.73 1.92 60.4 -2.25 -0.59 25.4 87 9 6 8 1 1 0 0  DT 4002 E DG 4003 E
14 2.42 2.55 66.2 -2.26 -0.45 30.5 84 14 5 4 3 0 1 0  DT 4005 C DG 4006 C
15 1.50 1.66 73.2 -1.88 -0.62 19.0 86 9 6 8 3 1 1 0  DT 4002 E DG 4003 E
16 2.22 2.22 76.4 -2.46 -0.60 25.2 82 10 4 7 2 1 1 0  DT 5007 B
17 2.47 2.70 94.7 -1.98 -0.63 17.2 84 8 4 11 3 1 2 0  DT 5007 B DT 4005 E DG 4006 E
18 1.53 1.53 97.8 -2.03 -0.61 19.5 85 14 6 9 4 0 3 0  
19 2.00 1.94 102.2 -1.51 -0.58 19.3 84 7 6 2 2 1 1 0  DT 4002 G DG 4003 G DT 4005 G DG 4006 G DC 5015 H
20 2.28 2.27 154.2 -1.58 -0.55 15.1 85 12 2 5 2 2 2 0  DT 4005 C DG 4006 C DG 4003 E DC 4004 E DT 4005 E
DC 5015 F DT 4002 G DG 4003 G DT 4005 G DC 5015 H

Residue-type_colouring
Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine
H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C

Acknowledgement
Pores were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.
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