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PDBsum entry 1ot5

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Hydrolase/hydrolase inhibitor PDB id
1ot5
Contents
Protein chains
477 a.a. *
Ligands
ACE-ALA-LYS-BOR ×2
NAG-NAG ×2
NAG ×2
Metals
_CA ×6
Waters ×492
* Residue conservation analysis

References listed in PDB file
Key reference
Title 2.4 a resolution crystal structure of the prototypical hormone-Processing protease kex2 in complex with an ala-Lys-Arg boronic acid inhibitor.
Authors T.Holyoak, M.A.Wilson, T.D.Fenn, C.A.Kettner, G.A.Petsko, R.S.Fuller, D.Ringe.
Ref. Biochemistry, 2003, 42, 6709-6718. [DOI no: 10.1021/bi034434t]
PubMed id 12779325
Abstract
This paper reports the first structure of a member of the Kex2/furin family of eukaryotic pro-protein processing proteases, which cleave sites consisting of pairs or clusters of basic residues. Reported is the 2.4 A resolution crystal structure of the two-domain protein ssKex2 in complex with an Ac-Ala-Lys-boroArg inhibitor (R = 20.9%, R(free) = 24.5%). The Kex2 proteolytic domain is similar in its global fold to the subtilisin-like superfamily of degradative proteases. Analysis of the complex provides a structural basis for the extreme selectivity of this enzyme family that has evolved from a nonspecific subtilisin-like ancestor. The P-domain of ssKex2 has a novel jelly roll like fold consisting of nine beta strands and may potentially be involved, along with the buried Ca(2+) ion, in creating the highly determined binding site for P(1) arginine.
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