PDBsum entry 1oqy Go to PDB code:  Tunnel analysis for: 1oqy calculated with MOLE 2.0 PDB id 1oqy Tunnels calculated on whole structure Tunnels calculated excluding ligands View options MOLEonline 2.0 manipulation and visualization with HETATM: without HETATM:   4 tunnels, coloured by tunnel radius 4 tunnels, coloured by tunnel radius 4 tunnels, coloured as in list below Tunnels are interior spaces connected with the protein surrounding. Only channels longer than 15 Å are shown. Tunnels Free R Length HPathy HPhob Polar Rel Mut Residue..type Ligands Radius 1 1.35 1.70 15.1 -0.93 -0.21 26.2 88 1 3 0 4 0 0 0   2 1.26 2.14 19.2 1.41 0.41 8.8 77 1 2 0 8 1 0 0   3 1.23 2.09 21.4 1.90 0.61 8.2 82 1 2 0 9 0 0 0   4 1.24 1.24 18.6 -2.03 -0.10 29.0 69 2 1 0 1 1 1 0   Residue-type_colouring Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C Acknowledgement Tunnels were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.