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PDBsum entry 1opj

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Top Page protein ligands metals Protein-protein interface(s) pores links
Pore analysis for: 1opj calculated with MOLE 2.0 PDB id
1opj
Pores calculated on whole structure Pores calculated excluding ligands

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0 pores, coloured by radius 15 pores, coloured by radius 15 pores, coloured as in
list below
Pores are connected internal spaces going through the structure. Only pores longer than 25 Å are shown.
Pores
Free R
Length
HPathy
HPhob
Polar
Rel Mut
Residue..type
Ligands
Radius
1 1.59 1.59 26.4 1.07 0.37 7.8 70 2 1 0 5 3 0 0  STI 3 A
2 1.45 1.45 26.4 0.80 0.30 13.0 72 2 2 0 5 2 0 0  STI 4 B
3 1.39 1.45 39.3 -0.98 -0.19 21.9 79 4 6 1 5 1 0 0  STI 3 A
4 2.13 2.16 40.4 0.06 0.11 15.0 78 3 5 1 7 3 0 0  STI 4 B
5 1.38 1.45 40.6 0.68 0.31 7.9 73 3 3 0 8 4 0 0  STI 3 A
6 2.07 2.08 40.7 -0.06 -0.02 16.6 79 3 4 1 7 3 0 0  STI 3 A
7 1.47 1.64 41.0 0.22 -0.08 8.9 82 1 4 7 7 2 0 0  STI 4 B
8 1.41 1.69 42.0 -0.65 -0.31 17.0 83 5 3 4 7 0 0 0  STI 3 A
9 1.42 1.70 44.4 -0.74 -0.36 17.7 80 5 4 3 8 0 0 0  STI 3 A
10 1.48 1.64 47.7 -0.42 -0.05 13.5 74 3 5 4 6 5 0 0  STI 4 B
11 1.45 1.67 56.3 -1.07 -0.20 22.9 76 5 6 2 6 4 0 0  STI 4 B
12 1.46 1.68 60.8 -0.50 -0.24 18.0 85 3 5 6 7 1 0 0  STI 4 B
13 1.45 1.75 86.6 -0.46 -0.24 13.5 80 4 8 7 11 3 0 0  STI 3 A
14 1.43 1.69 87.7 0.18 0.11 8.7 75 6 5 5 17 7 2 0  STI 3 A
15 1.48 1.69 98.6 -0.60 -0.25 13.1 77 3 8 5 9 5 0 0  STI 3 A

Residue-type_colouring
Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine
H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C

Acknowledgement
Pores were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.
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