PDBsum entry 1ooq

Tunnel analysis for: 1ooq calculated with

MOLE 2.0

PDB id

1ooq

Tunnels calculated on whole structure

Tunnels calculated excluding ligands

View options

MOLEonline 2.0 manipulation
and
visualization
with HETATM:

without HETATM:

1 tunnel, coloured by tunnel radius

5 tunnels, coloured by tunnel radius

5 tunnels, coloured as in
list below

Tunnels are interior spaces connected with the protein surrounding. Only channels longer than 15 Å are shown.

Tunnels

Free R

Length

HPathy

HPhob

Polar

Rel Mut

Residue..type

Ligands

Radius

1

1.29

1.51

25.4

-1.01

-0.33

11.7

71

2

1

3

1

3

1

0

FMN 218 A DTC 222 B

2

1.29

1.51

26.7

-0.67

-0.23

9.3

79

1

1

4

2

3

1

0

FMN 218 A DTC 222 B

3

1.29

1.51

31.1

-0.61

-0.22

12.1

77

2

1

4

3

2

1

0

FMN 218 A DTC 222 B

4

1.11

2.08

34.0

-0.54

-0.29

11.9

78

2

2

2

4

2

1

0

FMN 218 A DTC 222 B

5

1.29

1.51

43.4

-1.83

-0.56

19.6

83

7

1

4

1

0

1

0

FMN 218 A DTC 222 B

Residue-type_colouring

Positive	Negative	Neutral	Aliphatic	Aromatic	Pro & Gly	Cysteine
H,K,R	D,E	S,T,N,Q	A,V,L,I,M	F,Y,W	P,G	C

Acknowledgement

Tunnels were calculated by

MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.