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PDBsum entry 1ooj
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Metal binding protein
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PDB id
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1ooj
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Contents |
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* Residue conservation analysis
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PDB id:
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| Name: |
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Metal binding protein
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Title:
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Structural genomics of caenorhabditis elegans : calmodulin
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Structure:
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Calmodulin cmd-1. Chain: a. Engineered: yes
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Source:
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Caenorhabditis elegans. Organism_taxid: 6239. Expressed in: escherichia coli. Expression_system_taxid: 562.
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Resolution:
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2.11Å
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R-factor:
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0.212
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R-free:
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0.271
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Authors:
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J.Symersky,G.Lin,S.Li,S.Qiu,C.-H.Luan,D.Luo,J.Tsao,M.Carson, L.Delucas,M.Luo,Southeast Collaboratory For Structural Genomics (Secsg)
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Key ref:
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J.Symersky
et al.
(2003).
Structural genomics of caenorhabditis elegans: crystal structure of calmodulin.
Proteins,
53,
947-949.
PubMed id:
DOI:
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Date:
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03-Mar-03
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Release date:
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25-Mar-03
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PROCHECK
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Headers
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References
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O16305
(CALM_CAEEL) -
Calmodulin from Caenorhabditis elegans
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Seq:
Struc:
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149 a.a.
141 a.a.
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Key: |
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PfamA domain |
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Secondary structure |
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CATH domain |
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DOI no:
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Proteins
53:947-949
(2003)
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PubMed id:
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Structural genomics of caenorhabditis elegans: crystal structure of calmodulin.
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J.Symersky,
G.Lin,
S.Li,
S.Qiu,
M.Carson,
N.Schormann,
M.Luo.
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ABSTRACT
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Selected figure(s)
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Figure 1.
Figure 1. (Top) A stereo view of CaM superpositions based on C-
 positions
of the N-terminal domains (residues 9-71). The C. elegans CaM
(PDB code: 1OOJ) is shown as an orange ribbon with silver
calcium spheres. The N- and C-termini are labeled. The other
CaM's are shown in one color with smaller ribbons and spheres:
3CLN,[8] white; 4CLN,[9] lavender; 1CLL,[10] yellow; 1OSA,[12]
green; 1EXR,[13] cyan. (Bottom) A close-up of the central
helices with the same coloring and superposition as above. The
helical centers were fitted to a circle to determine the radius
of curvature (116 Å for C. elegans CaM). The circular arcs
in cyan (1EXR, radius 63 Å) and yellow (1CLL, radius 72
Å) show the fits for the atomic-resolution fungal and
human CaM, respectively.
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The above figure is
reprinted
by permission from John Wiley & Sons, Inc.:
Proteins
(2003,
53,
947-949)
copyright 2003.
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Literature references that cite this PDB file's key reference
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PubMed id
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Reference
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E.Laine,
J.D.Yoneda,
A.Blondel,
and
T.E.Malliavin
(2008).
The conformational plasticity of calmodulin upon calcium complexation gives a model of its interaction with the oedema factor of Bacillus anthracis.
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Proteins,
71,
1813-1829.
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S.L.Russell,
N.V.McFerran,
E.M.Hoey,
A.Trudgett,
and
D.J.Timson
(2007).
Characterisation of two calmodulin-like proteins from the liver fluke, Fasciola hepatica.
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Biol Chem,
388,
593-599.
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K.Chen,
J.Ruan,
and
L.A.Kurgan
(2006).
Prediction of three dimensional structure of calmodulin.
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Protein J,
25,
57-70.
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,
(2004).
Current awareness on comparative and functional genomics.
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Comp Funct Genomics,
5,
373-380.
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The most recent references are shown first.
Citation data come partly from CiteXplore and partly
from an automated harvesting procedure. Note that this is likely to be
only a partial list as not all journals are covered by
either method. However, we are continually building up the citation data
so more and more references will be included with time.
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Links
