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PDBsum entry 1ogs

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Top Page protein ligands Protein-protein interface(s) tunnels links
Tunnel analysis for: 1ogs calculated with MOLE 2.0 PDB id
1ogs
Tunnels calculated on whole structure Tunnels calculated excluding ligands

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10 tunnels, coloured by tunnel radius 21 tunnels, coloured by tunnel radius 21 tunnels, coloured as in
list below
Tunnels
Length
Hydropathy
Hydrophobicity
Polarity
Mutability
Residue..type
Ligands
Radius
1 1.55 17.3 -0.59 -0.29 12.2 89 5 0 2 4 0 0 0  
2 1.41 19.7 -0.44 -0.32 10.3 87 5 0 2 4 1 0 0  
3 1.54 21.7 -0.68 -0.45 9.5 86 3 0 2 4 0 1 0  
4 1.51 24.0 -0.63 -0.46 8.7 85 3 0 2 4 1 1 0  
5 1.48 11.9 -1.82 -0.57 15.1 78 1 1 2 0 1 2 0  
6 1.71 15.7 -0.39 -0.39 10.3 71 1 2 0 2 2 1 0  
7 1.54 17.8 -0.80 -0.41 15.8 79 3 1 2 2 2 0 0  
8 1.54 18.0 -0.19 -0.34 9.3 76 3 1 2 2 2 0 1  
9 1.69 19.9 -0.33 -0.37 10.8 70 1 3 0 2 2 1 0  
10 1.52 35.2 -0.07 0.20 10.3 68 4 3 1 3 5 2 0  
11 1.32 40.2 -0.87 -0.14 15.3 69 3 3 1 3 4 1 0  
12 1.72 8.9 -0.51 0.63 14.8 55 0 2 0 0 5 0 0  1498 SO4 A
13 1.49 14.7 -2.12 -0.59 19.1 81 1 1 2 0 1 1 0  
14 1.42 15.3 -0.57 -0.38 10.6 85 1 0 2 2 1 0 0  
15 1.43 16.8 -0.39 -0.34 8.1 87 2 0 2 4 1 0 0  
16 1.67 11.5 0.76 0.20 12.2 72 0 3 0 3 0 1 0  
17 1.29 19.0 1.88 0.49 1.4 70 0 0 0 7 3 0 0  
18 1.26 21.2 1.94 0.50 1.3 72 0 0 0 6 3 0 0  
19 1.36 7.1 1.00 0.31 6.2 72 0 1 0 3 2 0 0  
20 1.32 17.1 -0.36 -0.05 16.9 78 1 2 0 3 1 1 0  
21 1.98 3.6 -1.95 -0.36 16.3 90 1 1 2 0 1 0 0  1500 SO4 B

Residue-type_colouring
Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine
H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C

Acknowledgement
Tunnels were calculated by MOLE 2.0 program and visualized using Pymol 0.97rc.
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