spacer
spacer

PDBsum entry 1od0

Go to PDB code: 
Top Page protein Protein-protein interface(s) tunnels links
Tunnel analysis for: 1od0 calculated with MOLE 2.0 PDB id
1od0
Tunnels calculated on whole structure Tunnels calculated excluding ligands

View options
MOLEonline 2.0 manipulation
and
visualization
with HETATM:
without HETATM:
 
4 tunnels, coloured by tunnel radius 4 tunnels, coloured by tunnel radius 4 tunnels, coloured as in
list below
Tunnels
Length
Hydropathy
Hydrophobicity
Polarity
Mutability
Residue..type
Ligands
Radius
1 1.36 22.7 -1.72 0.29 21.9 72 3 2 3 1 5 0 0  
2 2.40 2.6 -0.49 0.69 1.8 66 0 0 0 1 2 0 0  
3 1.66 5.2 0.09 0.77 17.9 67 2 0 0 1 2 0 0  
4 1.57 6.7 0.50 0.73 13.2 66 1 0 0 1 3 0 0  

Residue-type_colouring
Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine
H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C

Acknowledgement
Tunnels were calculated by MOLE 2.0 program and visualized using Pymol 0.97rc.
spacer
spacer