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Ligand clusters for UniProt code Q08638

Ligand clusters for Q08638: Beta-glucosidase A OS=Thermotoga maritima (strain ATCC 43589 / MSB8 / DSM 3109 / JCM 10099) GN=bglA PE=1 SV=1

Top 6 (of 7) ligand clusters
Cluster 1.
26 ligand types
26 ligands
Cluster 2.
2 ligand types
3 ligands
Cluster 3.
1 ligand type
16 ligands
Cluster 4.
1 ligand type
1 ligand
Cluster 5.
1 ligand type
1 ligand
Cluster 6.
1 ligand type
1 ligand
Representative protein: 1oifA  
 

Structures

PDB   Schematic diagram
1oifA    
2cetA    
2j7gA    
1oimA    
1w3jA    
 more ...

 

 Cluster 1 contains 26 ligand types (of which only 20 are listed. Click for all)

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Ligand Description


 
1. Ligand: ACT × 1
acetic acid
Acetate ion
PDB code: 2jal(A).


 
2. Ligand: G2F × 1
2-Deoxy-2-Fluoro-Alpha-D-Glucopyranose
PDB code: 1oin(A).


 
3. Ligand: YLL × 1
(1r,2s,3s,4s,5r,6r)-6-(Hydroxymethyl) cyclohexane-1,2,3,4,5-Pentol
PDB code: 2jal(A).


 
4. Ligand: NOJ × 1
1-Deoxynojirimycin
PDB code: 1oim(A).


 
5. Ligand: CGB × 1
Calystegine b2
PDB code: 2cbv(A).


 
6. Ligand: OXZ × 1
Tetrahydrooxazine
PDB code: 1w3j(A).


 
7. Ligand: CTS × 1
Castanospermine
PDB code: 2cbu(A).


 
8. Ligand: GOX × 1
(2s,3s,4r,5r)-6-(Hydroxyamino)-2- (Hydroxymethyl)-2,3,4,5-Tetrahydropyridine-3,4,5- Triol
PDB code: 2j78(A).


 
9. Ligand: GTL × 1
(2e,3r,4r,5r,6s)-3,4,5-Trihydroxy-6- (Hydroxymethyl)-2-Piperidinone
PDB code: 2j79(A).


 
10. Ligand: NOY × 1
(2r,3s,4r,5r)-5-(Hydroxymethyl)piperidine-2, 3,4-Triol
PDB code: 2j75(A).


 
11. Ligand: GIM × 1
Glucoimidazole
PDB code: 2ces(A).


 
12. Ligand: NTZ × 1
Nojirimycine tetrazole
PDB code: 2j7b(A).


 
13. Ligand: AZF × 1
Azafagomine
PDB code: 2j7h(A).


 
14. Ligand: IFM × 1
5-Hydroxymethyl-3,4-Dihydroxypiperidine
PDB code: 1oif(A).


 
15. Ligand: GI3 × 1
Carboxylate-Substituted glucoimidazole
PDB code: 2j7f(A).


 
16. Ligand: IFL × 1
(3s,4r,5r)-3,4-Dihydroxy-5-(Hydroxymethyl) piperidin-2-One
PDB code: 1uz1(A).


 
17. Ligand: GI1 × 1
Methoxycarbonyl-Substituted glucoimidazole
PDB code: 2j7d(A).


 
18. Ligand: GI4 × 1
Methyl acetic acid-Substituted glucoimidazole
PDB code: 2j7g(A).


 
19. Ligand: GI2 × 1
Methyl acetate-Substituted glucoimidazole
PDB code: 2j7e(A).


 
20. Ligand: EDO × 1
1,2-Ethanediol
PDB code: 2j78(A).

 + more. Press for full list
 

 

 Cluster 2 contains 2 ligand types

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Ligand Description


 
1. Ligand: ACT × 1
acetic acid
Acetate ion
PDB code: 2j7h(A).

_Ca
 
2. Metal: _CA × 2
PDB codes: 2j7h(A), 2vrj(A).

 

 Cluster 3 contains 1 ligand type

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Ligand Description


 
1. Ligand: ACT × 16
acetic acid
Acetate ion
PDB codes: 2cbu(A), 2cbv(A), 2ces(A), 2cet(A), 2j75(A), 2j78(A), 2j79(A), 2j7b(A), 2j7c(A), 2j7d(A), 2j7e(A), 2j7f(A), 2j7g(A), 2j7h(A), 2jal(A), 2vrj(A).

 

 Cluster 4 contains 1 ligand type

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Ligand Description


 
1. Ligand: ACT × 1
acetic acid
Acetate ion
PDB code: 2cbu(A).

 

 Cluster 5 contains 1 ligand type

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Ligand Description


 
1. Ligand: EDO × 1
1,2-Ethanediol
PDB code: 2wc4(A).

 

 Cluster 6 contains 1 ligand type

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Ligand Description

_Ca
 
1. Metal: _CA × 1
PDB code: 2j78(A).

 

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