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PDBsum entry 1o4x

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Top Page protein dna_rna Protein-protein interface(s) tunnels links
Tunnel analysis for: 1o4x calculated with MOLE 2.0 PDB id
1o4x
Tunnels calculated on whole structure Tunnels calculated excluding ligands

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3 tunnels, coloured by tunnel radius 3 tunnels, coloured by tunnel radius 3 tunnels, coloured as in
list below
Tunnels are interior spaces connected with the protein surrounding. Only channels longer than 15 Å are shown.
Tunnels
Free R
Length
HPathy
HPhob
Polar
Rel Mut
Residue..type
Ligands
Radius
1 1.34 1.34 16.5 -1.97 -0.47 14.3 76 2 0 1 1 1 0 0  DG 313 C DC 314 C DT 315 C DA 316 C DT 323 D
2 1.34 1.35 16.8 -1.83 -0.22 17.8 77 3 1 1 1 1 0 0  DT 315 C DA 316 C
3 1.08 1.08 72.1 -0.87 -0.42 13.7 85 3 1 2 3 1 0 0  DG 313 C DC 314 C DT 315 C DA 316 C DA 317 C DT
318 C DG 319 C DT 323 D DA 324 D DG 325 D DC 326 D

Residue-type_colouring
Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine
H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C

Acknowledgement
Tunnels were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.
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