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PDBsum entry 1o18
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Top Page protein Protein-protein interface(s) pores links
Pore analysis for: 1o18 calculated with MOLE 2.0 PDB id
1o18
Pores calculated on whole structure Pores calculated excluding ligands
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41 pores, coloured by radius 49 pores, coloured by radius 49 pores, coloured as in
list below
Pores are connected internal spaces going through the structure. Only pores longer than 25 Å are shown.
Pores
Free R
Length
HPathy
HPhob
Polar
Rel Mut
Residue..type
Ligands
Radius
1 1.56 2.07 39.3 -1.43 -0.41 21.0 85 2 4 1 5 1 0 0  MLY 19 D MLY 30 D MLY 49 D MLY 87 D MLY 107 D
2 1.23 2.43 59.5 -1.02 -0.15 17.4 83 4 6 2 8 5 1 0  MLY 19 J MLY 30 J MLY 84 J MLY 87 J
3 1.74 1.84 73.0 -1.13 -0.25 22.3 81 5 9 3 9 4 0 0  MLY 19 G MLY 30 G MLY 87 G MLY 764 G
4 2.62 2.63 82.9 -1.21 -0.49 14.1 82 6 5 5 4 1 2 0  
5 2.39 3.11 95.1 -1.51 -0.33 19.9 70 3 4 1 1 4 2 0  MLY 130 J MLY 236 J MLY 681 J
6 2.09 2.09 101.1 -1.57 -0.27 23.6 84 13 8 4 9 4 1 0  
7 2.51 2.50 167.7 -1.48 -0.31 21.4 83 12 13 10 10 6 1 0  MLY 431 J MLY 598 J MLY 600 J
8 1.80 1.84 186.8 -0.97 -0.22 20.1 77 11 12 5 15 8 1 0  MLY 84 D MLY 87 D MLY 272 D MLY 431 D MLY 598 D
MLY 768 D
9 2.60 2.62 196.4 -1.37 -0.33 19.2 84 9 11 9 11 6 1 0  MLY 598 J MLY 600 J MLY 681 J
10 2.00 2.01 190.5 -1.60 -0.41 21.3 84 20 17 10 16 6 1 0  
11 1.81 2.44 215.2 -1.65 -0.48 20.1 83 14 20 15 19 7 1 0  MLY 272 D MLY 431 D MLY 598 D MLY 600 D
12 2.48 2.47 233.2 -1.41 -0.35 20.9 85 16 20 9 18 6 1 0  MLY 598 J MLY 600 J MLY 681 J
13 1.95 2.15 256.6 -1.66 -0.46 23.3 85 25 29 13 27 6 1 0  MLY 272 D MLY 431 D MLY 598 D MLY 600 D
14 2.00 3.37 265.9 -1.62 -0.41 23.5 84 22 31 11 28 8 1 0  MLY 272 D MLY 431 D MLY 598 D MLY 600 D
15 1.20 1.27 275.2 -1.25 -0.33 18.9 85 15 26 15 27 8 0 0  MLY 190 A MLY 236 A MLY 598 A MLY 600 A MLY 681 A
16 1.69 3.11 281.1 -1.45 -0.33 22.6 81 16 26 10 18 12 1 0  MLY 19 G MLY 30 G MLY 84 G MLY 87 G MLY 431 G MLY
598 G MLY 600 G
17 1.94 2.33 292.8 -1.36 -0.40 21.0 84 15 30 13 21 11 0 0  MLY 272 D MLY 431 D MLY 598 D MLY 600 D MLY 598 J
MLY 600 J MLY 681 J
18 2.18 3.14 292.6 -1.64 -0.40 20.8 86 26 25 17 34 8 2 0  
19 1.20 1.62 301.9 -1.16 -0.29 19.3 86 17 27 14 28 7 1 0  MLY 190 A MLY 598 A MLY 600 A MLY 681 A
20 1.97 1.79 294.3 -1.51 -0.34 22.2 84 28 31 15 27 10 1 0  MLY 431 J MLY 598 J MLY 600 J
21 1.25 1.44 321.0 -1.17 -0.29 21.7 81 22 33 13 23 14 0 1  MLY 272 D MLY 431 D MLY 598 D MLY 600 D MLY 431 G
MLY 598 G MLY 600 G
22 2.46 2.47 334.0 -1.65 -0.40 23.2 87 37 34 15 43 7 2 0  
23 1.24 1.43 335.1 -1.31 -0.27 22.5 83 30 31 13 29 12 1 1  MLY 431 G MLY 598 G MLY 600 G
24 1.31 1.51 402.0 -1.03 -0.23 20.6 79 19 22 6 25 9 5 2  MLY 84 D MLY 87 D MLY 839 D
25 2.63 4.37 384.7 -1.52 -0.36 22.3 85 29 38 15 37 12 1 0  MLY 598 J MLY 600 J MLY 681 J
26 1.25 1.53 382.8 -1.48 -0.36 22.2 82 25 35 13 30 13 2 0  MLY 19 A MLY 30 A MLY 49 A MLY 84 A MLY 87 A MLY
431 A MLY 598 A MLY 600 A MLY 768 A
27 1.20 1.58 409.5 -1.43 -0.34 22.5 83 27 36 12 31 12 3 0  MLY 19 A MLY 30 A MLY 49 A MLY 84 A MLY 87 A MLY
431 A MLY 598 A MLY 600 A MLY 768 A
28 1.21 1.57 406.8 -1.42 -0.39 22.7 82 23 39 14 26 13 2 0  MLY 19 A MLY 30 A MLY 49 A MLY 84 A MLY 87 A MLY
431 A MLY 598 A MLY 600 A MLY 768 A MLY 272 D MLY
431 D MLY 598 D
29 1.21 2.37 447.8 -1.15 -0.21 20.9 81 32 40 16 30 20 1 1  MLY 431 G MLY 598 G MLY 600 G MLY 19 J MLY 35 J
MLY 84 J MLY 87 J MLY 431 J MLY 598 J MLY 600 J
30 1.94 2.22 479.7 -1.58 -0.36 22.9 84 45 44 20 42 14 2 0  MLY 84 D MLY 87 D MLY 431 D MLY 598 D MLY 600 D
MLY 768 D
31 2.77 3.49 26.7 -1.28 -0.65 23.7 88 0 4 1 4 1 0 0  MLY 19 P MLY 30 P MLY 87 P
32 1.15 1.32 41.7 0.07 0.07 12.9 86 1 4 4 7 0 0 0  MLY 190 P
33 2.63 2.84 64.8 -0.41 -0.17 19.5 75 3 8 3 7 5 0 0  MLY 272 P MLY 431 P MLY 598 P
34 2.61 2.76 66.0 -1.02 -0.55 19.8 81 1 9 4 8 2 2 0  MLY 272 P MLY 415 P MLY 431 P MLY 598 P MLY 600 P
35 2.84 2.82 77.5 -0.93 -0.37 21.1 81 4 11 4 6 3 2 0  MLY 415 P MLY 431 P MLY 598 P MLY 600 P
36 1.48 2.12 83.2 0.04 0.09 14.3 88 4 6 4 13 0 1 0  MLY 782 P
37 2.38 3.07 98.9 -0.25 -0.16 14.8 77 1 9 6 8 7 0 0  MLY 272 P MLY 431 P MLY 598 P MLY 681 P
38 1.94 2.49 110.8 -0.32 -0.07 15.4 84 6 8 5 12 2 0 0  MLY 35 P MLY 768 P MLY 782 P
39 2.52 2.98 118.3 -0.62 -0.32 15.8 82 2 10 5 8 4 2 0  MLY 236 P MLY 415 P MLY 598 P MLY 600 P MLY 681 P
40 1.37 1.98 142.5 -0.58 -0.18 14.1 82 4 8 6 14 3 1 0  MLY 35 P MLY 768 P MLY 782 P
41 1.51 2.18 231.6 -1.06 -0.28 19.6 83 10 12 8 16 4 1 0  MLY 35 P MLY 130 P MLY 681 P MLY 768 P MLY 782 P
42 1.67 1.75 27.6 0.95 0.36 9.3 78 1 3 0 6 4 0 0  MLY 827 P MLY 839 P
43 1.21 2.21 31.8 1.79 0.61 6.4 78 2 1 1 9 1 0 0  
44 1.67 1.75 35.7 0.57 0.28 13.2 77 2 4 0 6 4 0 0  MLY 827 P MLY 839 P
45 1.66 1.75 50.0 -0.26 0.01 17.6 76 3 5 0 5 4 1 0  MLY 827 P MLY 833 P MLY 837 P MLY 839 P
46 1.53 1.74 51.6 0.87 0.33 12.0 81 4 2 2 8 1 1 0  
47 1.40 2.58 31.9 2.08 0.71 5.5 83 2 1 2 8 1 0 0  
48 1.39 1.58 43.0 1.30 0.41 7.4 79 2 5 0 9 4 1 0  MLY 827 M MLY 839 M
49 1.25 2.31 44.2 1.37 0.47 8.3 79 3 1 1 9 1 0 0  

Residue-type_colouring
Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine
H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C

Acknowledgement
Pores were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.
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