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PDBsum entry 1nmk

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Top Page protein ligands Protein-protein interface(s) tunnels links
Tunnel analysis for: 1nmk calculated with MOLE 2.0 PDB id
1nmk
Tunnels calculated on whole structure Tunnels calculated excluding ligands

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8 tunnels, coloured by tunnel radius 9 tunnels, coloured by tunnel radius 9 tunnels, coloured as in
list below
Tunnels
Length
Hydropathy
Hydrophobicity
Polarity
Mutability
Residue..type
Ligands
Radius
1 1.28 20.0 0.73 0.84 9.7 67 2 0 1 3 4 0 1  166 SFM A,201 SFM B
2 1.28 23.6 1.13 1.08 6.6 69 3 0 2 4 5 0 1  166 SFM A,201 SFM B
3 1.28 27.6 -0.11 0.47 12.6 67 2 0 2 2 4 0 1  201 SFM B
4 1.28 34.2 0.09 0.42 10.7 71 3 1 1 3 4 0 1  201 SFM B
5 1.36 15.0 -0.35 -0.44 8.1 74 2 1 1 2 1 1 0  
6 1.95 8.4 -0.31 -0.25 12.1 77 0 1 0 4 0 2 0  
7 2.01 9.8 -0.72 -0.22 15.5 81 1 1 1 4 0 1 0  
8 1.96 10.6 -0.12 -0.20 9.2 77 1 1 0 4 0 2 0  
9 1.96 12.0 -0.75 -0.18 15.4 80 1 2 1 4 0 1 0  

Residue-type_colouring
Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine
H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C

Acknowledgement
Tunnels were calculated by MOLE 2.0 program and visualized using Pymol 0.97rc.
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