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PDBsum entry 1nma

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Top Page protein ligands Protein-protein interface(s) tunnels links
Tunnel analysis for: 1nma calculated with MOLE 2.0 PDB id
1nma
Tunnels calculated on whole structure Tunnels calculated excluding ligands

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17 tunnels, coloured by tunnel radius 16 tunnels, coloured by tunnel radius 16 tunnels, coloured as in
list below
Tunnels
Length
Hydropathy
Hydrophobicity
Polarity
Mutability
Residue..type
Ligands
Radius
1 2.23 11.2 -1.27 -0.24 22.3 77 1 1 1 2 1 0 0  
2 2.04 11.8 -2.27 -0.43 31.1 89 3 1 1 1 0 0 0  
3 2.03 14.5 -2.16 -0.37 26.0 83 3 0 2 1 1 0 0  
4 1.34 7.1 -1.13 -0.63 3.9 84 0 1 2 1 0 1 0  
5 1.63 8.0 -1.55 -0.71 6.6 82 1 1 2 1 0 1 0  
6 2.13 11.4 -1.66 -0.33 18.0 56 1 1 0 0 2 0 0  
7 1.69 12.0 -1.80 -0.26 21.0 72 2 1 1 0 2 0 0  
8 2.34 12.8 -1.46 -0.48 11.8 67 1 0 1 0 2 0 0  
9 2.68 4.8 -1.76 0.00 28.0 67 1 1 0 1 1 0 2  
10 1.93 29.9 -1.79 -0.89 23.2 76 0 4 0 0 0 1 0  
11 1.31 15.9 1.81 0.57 1.3 83 0 0 1 5 1 0 0  
12 1.29 16.4 2.02 0.54 1.3 88 0 0 1 5 1 0 0  
13 1.81 9.4 -0.06 -0.50 5.3 91 1 0 0 3 0 0 0  
14 1.40 11.1 -0.40 -0.44 10.2 88 2 1 0 3 0 0 0  
15 1.29 9.7 0.10 -0.07 8.2 79 0 1 1 2 1 1 0  
16 1.30 5.8 -2.16 -0.27 15.9 77 1 0 1 0 1 0 0  

Residue-type_colouring
Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine
H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C

Acknowledgement
Tunnels were calculated by MOLE 2.0 program and visualized using Pymol 0.97rc.
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