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PDBsum entry 1nk7
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Tunnel analysis for: 1nk7 calculated with  MOLE 2.0
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PDB id
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1nk7
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Tunnels calculated on whole structure |
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Tunnels calculated excluding ligands
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5 tunnels,
coloured by tunnel radius |
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8 tunnels,
coloured by
tunnel radius
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8 tunnels,
coloured as in
list below
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Tunnels are interior spaces connected with the protein surrounding. Only channels longer than 15 Å are shown. |
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Free R
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Length
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HPathy
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HPhob
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Polar
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Rel Mut
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Residue..type
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Ligands
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Radius |
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1 |
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1.19 |
1.52 |
19.0 |
-0.35 |
-0.17 |
17.7 |
76 |
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2 |
2 |
1 |
4 |
3 |
0 |
0 |
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2 |
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1.17 |
1.17 |
26.3 |
-1.85 |
-0.52 |
26.8 |
85 |
3 |
6 |
1 |
3 |
1 |
0 |
0 |
GLC 1 D FRU 2 D
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3 |
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1.17 |
1.17 |
30.1 |
-1.72 |
-0.55 |
26.6 |
80 |
3 |
6 |
1 |
3 |
1 |
0 |
0 |
DC 22 B DT 9 C GLC 1 D FRU 2 D
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4 |
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1.63 |
1.63 |
17.0 |
-1.48 |
-0.58 |
10.7 |
74 |
1 |
0 |
2 |
2 |
1 |
1 |
0 |
DC 25 B DA 26 B DT 12 C DG 13 C
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5 |
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1.43 |
1.44 |
18.5 |
-1.39 |
-0.59 |
10.3 |
74 |
2 |
0 |
2 |
2 |
1 |
1 |
0 |
DC 25 B DA 26 B DT 12 C DG 13 C
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6 |
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1.74 |
1.75 |
22.2 |
-1.03 |
-0.57 |
7.4 |
75 |
1 |
0 |
0 |
1 |
0 |
1 |
0 |
DC 22 B DA 23 B DT 24 B DC 25 B DT 12 C DG 13 C
DC 14 C DA 15 C
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7 |
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1.44 |
1.47 |
23.7 |
-0.91 |
-0.56 |
6.8 |
75 |
1 |
0 |
0 |
1 |
0 |
1 |
0 |
DC 22 B DA 23 B DT 24 B DC 25 B DT 12 C DG 13 C
DC 14 C DA 15 C
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8 |
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1.10 |
1.18 |
16.0 |
0.54 |
0.23 |
13.0 |
76 |
2 |
1 |
1 |
3 |
2 |
0 |
0 |
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Residue-type_colouring |
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Positive
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Negative
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Neutral
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Aliphatic
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Aromatic
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Pro & Gly
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Cysteine
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H,K,R
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D,E
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S,T,N,Q
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A,V,L,I,M
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F,Y,W
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P,G
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C
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MOLE 2.0 program