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PDBsum entry 1nji
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Tunnel analysis for: 1nji calculated with  MOLE 2.0
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PDB id
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1nji
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Tunnels calculated on whole structure |
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Tunnels calculated excluding ligands
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19 tunnels,
coloured by tunnel radius |
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29 tunnels,
coloured by
tunnel radius
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29 tunnels,
coloured as in
list below
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Tunnels are interior spaces connected with the protein surrounding. Only channels longer than 15 Å are shown. |
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Free R
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Length
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HPathy
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HPhob
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Polar
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Rel Mut
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Residue..type
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Ligands
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Radius |
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1 |
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1.24 |
1.55 |
116.7 |
-1.01 |
-0.72 |
12.2 |
87 |
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4 |
3 |
4 |
2 |
0 |
1 |
0 |
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U 645 A G 646 A U 647 A G 648 A U 649 A A 665 A A
666 A C 667 A U 675 A C 676 A C 677 A G 678 A G
679 A G 680 A G 681 A A 750 A U 751 A U 753 A G
755 A A 756 A C 757 A A 761 A C 762 A C 763 A C
764 A G 765 A A 766 A A 895 A C 896 A A 897 A U
1359 A C 1360 A A 2101 A A 2479 A G 2480 A
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2 |
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1.24 |
1.24 |
119.0 |
-0.72 |
-0.70 |
7.7 |
92 |
4 |
0 |
4 |
2 |
0 |
1 |
0 |
U 555 A C 556 A C 557 A U 595 A C 596 A A 597 A C
598 A G 607 A A 608 A U 609 A G 622 A G 634 A A
635 A C 638 A A 639 A G 640 A C 764 A G 765 A G
901 A G 902 A U 1320 A A 1321 A G 1322 A G 1323 A
G 1324 A G 1325 A U 1326 A A 1331 A C 1332 A U
1333 A A 1355 A A 1356 A A 1357 A A 1358 A U 1359
A C 1360 A A 2101 A G 2537 A
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3 |
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1.21 |
1.47 |
118.7 |
-0.68 |
-0.68 |
7.6 |
89 |
4 |
0 |
3 |
2 |
0 |
1 |
0 |
A 16 A G 17 A A 520 A A 540 A C 541 A G 543 A G
544 A G 545 A C 557 A C 558 A G 601 A A 602 A C
605 A C 606 A G 607 A A 608 A U 609 A G 610 A U
611 A G 622 A G 634 A A 635 A C 638 A A 639 A G
640 A C 764 A G 765 A G 901 A G 902 A A 1321 A G
1322 A A 1355 A A 1356 A A 1357 A A 1358 A U 1359
A C 1360 A A 2101 A G 2537 A NA 8366 A MG 8109 Z
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4 |
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1.26 |
1.44 |
126.4 |
-0.53 |
-0.68 |
5.5 |
91 |
3 |
0 |
3 |
2 |
0 |
1 |
0 |
U 624 A U 625 A U 626 A A 628 A A 632 A C 633 A G
634 A C 764 A G 765 A G 901 A G 956 A A 957 A G
958 A C 959 A G 960 A U 1001 A G 1002 A U 1003 A
C 1044 A G 1045 A G 1046 A U 1047 A G 1048 A C
1049 A G 1050 A C 1051 A G 1052 A C 1060 A C 1061
A U 1062 A A 1358 A U 1359 A C 1360 A A 2101 A G
2481 A G 2482 A A 2483 A C 2533 A U 2535 A G 2537
A NA 8350 A NA 8352 A A 3077 B U 3079 B A 3080 B
C 3081 B G 3094 B C 3095 B A 3105 B C 3106 B C
3107 B
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5 |
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1.26 |
1.44 |
129.7 |
-0.69 |
-0.61 |
8.1 |
83 |
3 |
1 |
2 |
2 |
1 |
1 |
0 |
U 651 A G 652 A U 701 A G 702 A G 703 A C 704 A G
720 A A 721 A G 722 A G 723 A G 724 A C 725 A G
742 A G 743 A G 744 A A 756 A C 757 A A 761 A C
762 A C 763 A C 764 A G 765 A A 766 A A 895 A C
896 A A 897 A A 926 A U 927 A G 1036 A G 1037 A G
1038 A G 1039 A A 1040 A U 1359 A C 1360 A A 2101
A A 2479 A G 2480 A
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6 |
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1.24 |
1.56 |
136.1 |
-1.22 |
-0.59 |
15.8 |
81 |
7 |
3 |
4 |
3 |
1 |
1 |
0 |
A 466 A G 467 A U 468 A A 476 A A 495 A G 496 A A
498 A G 499 A G 514 A C 764 A G 765 A A 766 A A
767 A U 768 A A 844 A A 882 A U 883 A U 888 A C
889 A A 895 A C 896 A A 897 A U 1359 A C 1360 A A
1390 A G 1391 A A 1427 A C 1428 A A 1689 A A 2101
A A 2479 A G 2480 A
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7 |
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1.24 |
1.55 |
139.9 |
-1.02 |
-0.62 |
13.1 |
81 |
6 |
3 |
4 |
3 |
1 |
1 |
0 |
A 466 A G 467 A U 468 A A 476 A U 488 A G 500 A G
501 A A 502 A G 503 A A 509 A U 510 A G 512 A A
513 A G 514 A C 764 A G 765 A A 766 A A 767 A U
768 A A 844 A A 882 A U 883 A U 888 A C 889 A A
895 A C 896 A A 897 A U 1359 A C 1360 A A 1427 A
C 1428 A A 1689 A A 2101 A A 2479 A G 2480 A
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8 |
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1.23 |
1.40 |
146.5 |
-0.47 |
-0.75 |
5.0 |
87 |
2 |
1 |
1 |
2 |
0 |
1 |
0 |
U 624 A U 625 A U 626 A A 628 A A 632 A C 633 A G
634 A C 764 A G 765 A G 901 A U 909 A C 910 A G
911 A A 913 A A 914 A C 915 A A 929 A C 930 A C
931 A C 933 A C 934 A A 943 A U 1030 A G 1031 A A
1032 A C 1033 A C 1044 A G 1045 A G 1046 A U 1062
A G 1063 A U 1064 A G 1065 A U 1066 A U 1270 A A
1271 A C 1272 A U 1279 A C 1281 A C 1289 A U 1298
A G 1299 A G 1300 A A 1358 A U 1359 A C 1360 A A
2101 A G 2481 A G 2482 A A 2483 A C 2533 A U 2535
A G 2537 A NA 8350 A
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9 |
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1.21 |
1.50 |
151.1 |
-0.62 |
-0.71 |
7.6 |
84 |
3 |
1 |
1 |
2 |
0 |
1 |
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C 764 A G 765 A A 766 A A 767 A U 768 A U 883 A C
884 A U 888 A A 895 A C 896 A A 897 A U 1359 A C
1360 A G 1837 A G 1945 A C 1946 A G 1947 A G 1948
A G 1971 A U 1972 A U 2004 A G 2005 A A 2007 A U
2008 A A 2100 A A 2101 A A 2103 A C 2104 A A 2474
A C 2477 A U 2478 A A 2479 A G 2480 A A 2538 A G
2540 A U 2620 A U 2621 A A 2624 A C 2625 A C 2626
A G 2627 A U 2628 A C 2629 A A 2635 A C 2636 A A
2637 A G 2638 A U 2640 A C 2644 A CLM 9001 A
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10 |
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1.20 |
1.40 |
169.0 |
-0.19 |
-0.47 |
5.4 |
84 |
3 |
1 |
2 |
6 |
2 |
1 |
0 |
U 624 A U 625 A U 626 A A 628 A A 632 A C 633 A G
634 A C 764 A G 765 A G 901 A A 913 A A 914 A C
915 A A 929 A C 930 A A 943 A G 944 A U 945 A C
946 A U 947 A C 1015 A U 1017 A A 1018 A C 1019 A
G 1024 A C 1025 A C 1044 A G 1045 A G 1046 A U
1062 A G 1063 A U 1064 A G 1065 A U 1066 A A 1358
A U 1359 A C 1360 A A 2101 A C 2393 A G 2481 A G
2482 A A 2483 A C 2533 A U 2535 A G 2537 A NA
8350 A G 3100 B G 3101 B
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11 |
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1.21 |
1.52 |
169.0 |
-0.80 |
-0.73 |
9.0 |
87 |
5 |
3 |
3 |
2 |
0 |
1 |
0 |
C 764 A G 765 A A 766 A U 768 A C 769 A C 770 A G
771 A G 772 A A 773 A U 866 A A 867 A G 868 A G
869 A G 887 A U 888 A C 889 A C 890 A A 895 A C
896 A A 897 A U 1359 A C 1360 A A 1459 A G 1460 A
U 1461 A C 1474 A G 1475 A A 1476 A C 1477 A U
1478 A A 1479 A C 1854 A G 1855 A A 1857 A A 1858
A A 1859 A C 1861 A C 1862 A G 1863 A C 1864 A G
1867 A G 1868 A A 1869 A C 1870 A U 1871 A C 1872
A G 1901 A A 1931 A G 1932 A A 2101 A G 2125 A C
2126 A U 2127 A G 2128 A C 2247 A C 2248 A A 2260
A C 2261 A C 2262 A A 2479 A G 2480 A
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12 |
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1.21 |
1.49 |
174.6 |
-0.77 |
-0.76 |
7.8 |
85 |
3 |
3 |
4 |
2 |
0 |
1 |
0 |
U 624 A U 625 A U 626 A A 628 A A 632 A C 633 A G
634 A C 764 A G 765 A G 901 A C 1044 A G 1045 A G
1046 A U 1047 A G 1048 A C 1049 A A 1058 A G 1059
A C 1060 A C 1061 A U 1062 A U 1120 A C 1126 A U
1128 A C 1129 A U 1130 A A 1231 A A 1232 A A 1233
A A 1236 A U 1237 A C 1238 A A 1358 A U 1359 A C
1360 A A 2101 A G 2481 A G 2482 A A 2483 A U 2492
A C 2493 A G 2524 A G 2525 A C 2533 A U 2535 A G
2537 A U 2550 A C 2551 A C 2552 A A 2577 A G 2578
A G 2674 A C 2676 A A 2677 A A 2678 A G 2679 A C
2802 A C 2803 A C 2804 A A 2805 A C 2806 A U 2808
A NA 8350 A C 3091 B G 3092 B A 3093 B
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13 |
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1.21 |
1.51 |
177.7 |
-0.54 |
-0.73 |
6.4 |
86 |
4 |
2 |
1 |
3 |
0 |
1 |
0 |
C 764 A G 765 A A 766 A A 767 A U 768 A A 788 A C
789 A A 790 A A 791 A A 827 A G 828 A A 829 A G
830 A U 831 A C 839 A U 845 A A 846 A C 847 A C
848 A U 850 A U 883 A C 884 A U 888 A A 895 A C
896 A A 897 A U 1359 A C 1360 A A 1406 A A 1407 A
U 1408 A U 1539 A G 1540 A G 1541 A G 1542 A G
1543 A A 1581 A U 1639 A C 1640 A A 1641 A A 1642
A A 1682 A G 1695 A U 1696 A G 1697 A U 1698 A C
1699 A C 1700 A A 1701 A A 1710 A G 1795 A G 1837
A U 1838 A G 2099 A A 2100 A A 2101 A C 2477 A U
2478 A A 2479 A G 2480 A C 2644 A U 2645 A G 2646
A NA 8379 A CLM 9001 A
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14 |
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1.21 |
1.51 |
178.9 |
-0.43 |
-0.72 |
5.1 |
85 |
2 |
1 |
1 |
3 |
0 |
1 |
0 |
C 764 A G 765 A A 766 A A 767 A U 768 A U 825 A G
828 A G 830 A U 831 A C 839 A U 845 A A 846 A C
847 A C 848 A C 849 A U 850 A C 851 A U 883 A C
884 A U 888 A A 895 A C 896 A A 897 A U 1359 A C
1360 A G 1378 A A 1379 A A 1407 A A 1712 A G 1713
A C 1753 A G 1756 A U 1757 A U 1758 A A 1759 A C
1768 A C 1769 A U 1817 A C 1818 A G 1820 A A 1821
A A 1822 A G 1823 A C 1824 A U 1825 A G 1837 A U
1838 A A 2018 A A 2019 A C 2020 A C 2021 A A 2022
A G 2023 A G 2099 A A 2100 A A 2101 A C 2477 A U
2478 A A 2479 A G 2480 A C 2644 A U 2645 A G 2646
A MG 8083 A NA 8379 A CLM 9001 A
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15 |
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1.23 |
1.51 |
190.1 |
-0.54 |
-0.71 |
6.5 |
91 |
1 |
3 |
5 |
5 |
0 |
2 |
0 |
U 624 A U 625 A U 626 A A 628 A A 632 A C 633 A G
634 A C 764 A G 765 A G 901 A G 956 A C 1044 A G
1045 A G 1046 A U 1047 A G 1048 A C 1049 A G 1050
A C 1051 A G 1052 A C 1060 A C 1061 A U 1062 A G
1135 A U 1136 A G 1137 A C 1140 A U 1141 A C 1142
A A 1215 A G 1216 A G 1217 A U 1220 A G 1221 A A
1222 A G 1223 A G 1224 A A 1358 A U 1359 A C 1360
A A 2101 A G 2481 A G 2482 A A 2483 A C 2533 A U
2535 A G 2537 A A 2784 A C 2785 A G 2786 A C 2787
A NA 8350 A NA 8352 A A 3080 B C 3081 B G 3092 B
G 3094 B C 3095 B C 3096 B
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16 |
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1.23 |
1.51 |
191.6 |
-0.98 |
-0.64 |
11.7 |
83 |
7 |
4 |
6 |
4 |
1 |
2 |
0 |
C 31 A C 62 A U 63 A C 85 A A 86 A C 101 A A 102
A G 296 A U 297 A C 298 A U 299 A C 300 A G 301 A
U 346 A A 347 A C 348 A U 349 A C 350 A C 444 A U
445 A G 446 A C 461 A A 462 A A 466 A G 467 A U
468 A A 476 A G 479 A C 480 A G 514 A G 672 A C
764 A G 765 A A 766 A A 767 A U 768 A A 844 A A
882 A U 883 A U 888 A C 889 A A 895 A C 896 A A
897 A U 1359 A C 1360 A A 1427 A C 1428 A A 1689
A A 2101 A A 2479 A G 2480 A
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17 |
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1.23 |
1.52 |
190.4 |
-0.95 |
-0.63 |
11.8 |
82 |
6 |
3 |
4 |
4 |
1 |
1 |
0 |
C 31 A G 44 A G 47 A A 48 A A 49 A C 62 A U 63 A
G 64 A C 65 A C 85 A A 86 A A 102 A U 103 A G 104
A G 105 A U 107 A U 108 A U 109 A C 110 A A 114 A
G 116 A C 443 A C 444 A C 461 A A 462 A A 466 A G
467 A U 468 A A 476 A G 479 A C 480 A G 514 A C
764 A G 765 A A 766 A A 767 A U 768 A A 844 A A
882 A U 883 A U 888 A C 889 A A 895 A C 896 A A
897 A U 1359 A C 1360 A A 1427 A C 1428 A A 1689
A A 2101 A A 2479 A G 2480 A NA 8329 A
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18 |
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1.21 |
1.49 |
191.8 |
-1.05 |
-0.62 |
12.9 |
81 |
7 |
6 |
4 |
4 |
2 |
1 |
0 |
C 29 A C 31 A C 87 A A 319 A G 320 A A 321 A G
322 A C 323 A G 324 A C 330 A G 332 A G 333 A G
334 A U 335 A A 337 A C 338 A A 339 A A 340 A C
341 A A 462 A A 466 A G 467 A U 468 A A 476 A G
479 A C 480 A U 481 A G 482 A C 483 A A 484 A G
514 A C 764 A G 765 A A 766 A A 767 A U 768 A A
844 A A 882 A U 883 A U 888 A C 889 A A 895 A C
896 A A 897 A C 1342 A U 1359 A C 1360 A A 1427 A
C 1428 A A 1689 A A 2101 A A 2479 A G 2480 A
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19 |
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1.38 |
1.38 |
15.4 |
-0.40 |
-0.80 |
3.4 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
A 1166 A G 1175 A C 1176 A G 1178 A C 1179 A U
1180 A A 1181 A A 1192 A A 1193 A A 1194 A G 1195
A
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20 |
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1.50 |
1.50 |
15.5 |
-0.40 |
-0.80 |
3.4 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
A 1161 A G 1162 A U 1164 A G 1165 A A 1166 A A
1174 A G 1175 A A 1192 A A 1193 A A 1202 A G 1203
A
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21 |
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1.70 |
1.70 |
17.1 |
-0.40 |
-0.80 |
3.4 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
G 1158 A G 1159 A G 1160 A A 1161 A A 1191 A C
1204 A U 1205 A U 1206 A A 1207 A
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22 |
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1.31 |
1.31 |
21.4 |
-0.40 |
-0.80 |
3.4 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
A 1173 A G 1175 A C 1176 A A 1177 A G 1178 A C
1179 A U 1180 A A 1181 A A 1194 A G 1195 A C 1201
A A 1202 A
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23 |
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1.21 |
1.21 |
25.8 |
-0.40 |
-0.80 |
3.4 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
A 1166 A A 1173 A A 1174 A G 1175 A C 1176 A A
1177 A G 1178 A C 1179 A U 1180 A A 1193 A G 1197
A A 1200 A C 1201 A
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24 |
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1.20 |
1.20 |
27.8 |
-0.40 |
-0.80 |
3.4 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
A 1166 A A 1173 A G 1175 A C 1176 A A 1177 A G
1178 A C 1179 A U 1180 A A 1192 A A 1193 A G 1197
A A 1200 A C 1201 A
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25 |
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1.19 |
1.19 |
28.8 |
-0.40 |
-0.80 |
3.4 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
A 1166 A A 1173 A G 1175 A C 1176 A A 1177 A G
1178 A C 1179 A U 1180 A A 1192 A A 1193 A G 1197
A A 1200 A C 1201 A
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26 |
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1.38 |
1.38 |
15.7 |
-2.46 |
-0.69 |
30.4 |
76 |
3 |
1 |
0 |
0 |
0 |
0 |
0 |
C 245 A G 246 A
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27 |
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1.26 |
1.26 |
25.4 |
0.01 |
0.05 |
12.0 |
83 |
4 |
1 |
0 |
5 |
2 |
0 |
0 |
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28 |
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1.64 |
1.69 |
15.7 |
-1.70 |
-0.35 |
16.6 |
84 |
2 |
0 |
1 |
1 |
1 |
0 |
0 |
C 2502 A A 2503 A A 2504 A G 2505 A A 2511 A
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29 |
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1.34 |
1.42 |
20.9 |
-1.09 |
-0.47 |
16.3 |
78 |
2 |
1 |
0 |
0 |
1 |
0 |
0 |
G 964 A A 965 A U 966 A
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Residue-type_colouring |
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Positive
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Negative
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Neutral
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Aliphatic
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Aromatic
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Pro & Gly
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Cysteine
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H,K,R
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D,E
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S,T,N,Q
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A,V,L,I,M
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F,Y,W
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P,G
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C
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MOLE 2.0 program