spacer
spacer

PDBsum entry 1ngq

Go to PDB code: 
Top Page protein ligands Protein-protein interface(s) links
Immunoglobulin PDB id
1ngq
Contents
Protein chains
211 a.a. *
215 a.a. *
Ligands
SO4
Waters ×140
* Residue conservation analysis
procheck   Generate full PROCHECK analyses

PROCHECK summary for 1ngq

Ramachandran plot

PROCHECK statistics

1. Ramachandran Plot statistics


                                         No. of
                                        residues     %-tage
                                         ------      ------
Most favoured regions      [A,B,L]          310       86.4%*  
Additional allowed regions [a,b,l,p]         40       11.1%          
Generously allowed regions [~a,~b,~l,~p]      8        2.2%          
Disallowed regions         [XX]               1        0.3%*  
                                           ----      ------
Non-glycine and non-proline residues        359      100.0%

End-residues (excl. Gly and Pro)              6

Glycine residues                             33
Proline residues                             28
                                           ----
Total number of residues                    426


Based on an analysis of 118 structures of resolution of at least 2.0 Angstroms and R-factor no greater than 20.0 a good quality model would be expected to have over 90% in the most favoured regions [A,B,L].


2. G-Factors

                                                Average
Parameter                            Score       Score
---------                            -----       -----
Dihedral angles:-
     Phi-psi distribution             1.03      
     Chi1-chi2 distribution          -0.64*     
     Chi1 only                       -0.25      
     Chi3 & chi4                      0.40      
     Omega                            0.35      
                                                   0.36      
                                                  =====
Main-chain covalent forces:-
     Main-chain bond lengths         -0.11      
     Main-chain bond angles          -1.61**
                                                  -0.98*     
                                                  =====

     OVERALL AVERAGE                              -0.12      
                                                  =====

G-factors provide a measure of how unusual, or out-of-the-ordinary, a property is.

Values below -0.5*  - unusual
Values below -1.0** - highly unusual
Important note: The main-chain bond-lengths and bond angles are compared with the Engh & Huber (1991) ideal values derived from small-molecule data. Therefore, structures refined using different restraints may show apparently large deviations from normality.

 

spacer

spacer