PDBsum entry 1nf3 Go to PDB code:  Tunnel analysis for: 1nf3 calculated with MOLE 2.0 PDB id 1nf3 Tunnels calculated on whole structure Tunnels calculated excluding ligands View options MOLEonline 2.0 manipulation and visualization with HETATM: without HETATM:   5 tunnels, coloured by tunnel radius 6 tunnels, coloured by tunnel radius 6 tunnels, coloured as in list below Tunnels are interior spaces connected with the protein surrounding. Only channels longer than 15 Å are shown. Tunnels Free R Length HPathy HPhob Polar Rel Mut Residue..type Ligands Radius 1 1.13 1.22 53.0 -2.00 -0.60 17.2 82 6 1 6 3 0 2 0   2 1.34 1.56 16.2 0.32 0.01 3.8 65 0 1 1 4 2 0 2  GNP 200 A 3 1.34 1.55 24.5 0.46 -0.09 1.9 70 0 0 1 4 2 1 2  GNP 200 A 4 1.78 1.84 15.6 -0.50 -0.27 13.5 91 1 1 1 2 0 1 0   5 1.52 1.61 20.3 -1.35 -0.35 24.6 84 2 2 1 2 0 1 0   6 1.18 1.48 16.1 -0.92 0.11 15.2 78 1 1 1 4 1 1 0   Residue-type_colouring Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C Acknowledgement Tunnels were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.