PDBsum entry 1ned Go to PDB code:  Pore analysis for: 1ned calculated with MOLE 2.0 PDB id 1ned Pores calculated on whole structure Pores calculated excluding ligands View options MOLEonline 2.0 manipulation and visualization with HETATM: without HETATM:   3 pores, coloured by radius 3 pores, coloured by radius 3 pores, coloured as in list below Pores are connected internal spaces going through the structure. Only pores longer than 25 Å are shown. Pores Free R Length HPathy HPhob Polar Rel Mut Residue..type Ligands Radius 1 1.29 2.57 54.9 -0.13 -0.06 14.3 80 4 0 0 3 2 0 0   2 1.51 1.82 37.7 0.13 -0.11 11.3 77 3 0 0 2 2 0 0   3 1.29 2.49 42.4 0.17 -0.02 11.8 78 4 0 0 2 2 0 0   Residue-type_colouring Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C Acknowledgement Pores were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.