PDBsum entry 1ned Go to PDB code:  Tunnel analysis for: 1ned calculated with MOLE 2.0 PDB id 1ned Tunnels calculated on whole structure Tunnels calculated excluding ligands View options MOLEonline 2.0 manipulation and visualization with HETATM: without HETATM:   7 tunnels, coloured by tunnel radius 7 tunnels, coloured by tunnel radius 7 tunnels, coloured as in list below Tunnels are interior spaces connected with the protein surrounding. Only channels longer than 15 Å are shown. Tunnels Free R Length HPathy HPhob Polar Rel Mut Residue..type Ligands Radius 1 1.11 1.11 20.8 1.77 0.41 5.9 86 1 1 2 7 0 0 0   2 1.11 1.11 21.3 2.04 0.46 4.3 87 1 1 1 7 0 0 0   3 1.17 1.17 20.2 2.02 0.44 4.2 87 1 1 1 7 0 0 0   4 1.17 1.17 20.6 1.38 0.31 7.3 86 1 1 2 7 0 0 0   5 1.12 1.13 20.8 2.08 0.47 4.2 87 1 1 1 7 0 0 0   6 1.15 1.28 18.7 1.73 0.53 7.0 64 1 2 0 4 1 0 0   7 1.18 1.31 15.7 2.04 0.70 5.9 65 2 1 0 4 1 0 0   Residue-type_colouring Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C Acknowledgement Tunnels were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.