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PDBsum entry 1ncd

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Top Page protein ligands metals Protein-protein interface(s) tunnels links
Tunnel analysis for: 1ncd calculated with MOLE 2.0 PDB id
1ncd
Tunnels calculated on whole structure Tunnels calculated excluding ligands

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15 tunnels, coloured by tunnel radius 13 tunnels, coloured by tunnel radius 13 tunnels, coloured as in
list below
Tunnels
Length
Hydropathy
Hydrophobicity
Polarity
Mutability
Residue..type
Ligands
Radius
1 1.33 20.4 -1.43 -0.19 24.1 85 4 2 2 1 1 1 0  
2 1.32 21.1 -1.33 -0.27 20.4 88 4 2 2 2 1 1 0  
3 1.33 23.3 -1.70 -0.46 22.5 93 4 2 4 3 0 1 0  
4 1.32 24.0 -1.72 -0.47 21.2 91 4 2 4 4 1 1 0  
5 1.61 10.1 -1.21 -0.41 11.7 75 1 1 1 0 1 0 0  
6 1.65 11.1 -2.50 -0.60 27.7 83 4 2 2 0 1 0 0  
7 1.96 3.9 0.12 -0.36 2.3 93 0 0 1 1 0 0 0  
8 1.28 5.9 -1.59 -0.91 12.9 89 0 1 1 0 0 0 0  
9 1.74 7.7 -0.04 -0.50 5.0 88 1 0 0 3 0 0 0  
10 2.18 2.6 -0.10 0.01 2.7 76 0 0 1 2 1 0 0  
11 2.19 3.2 -0.36 0.16 2.7 56 0 0 2 1 2 0 0  
12 1.59 8.0 0.38 0.05 1.7 88 0 0 1 1 2 0 0  
13 1.46 9.4 -0.20 -0.34 2.4 95 0 0 0 2 0 1 0  

Residue-type_colouring
Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine
H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C

Acknowledgement
Tunnels were calculated by MOLE 2.0 program and visualized using Pymol 0.97rc.
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