PDBsum entry 1nby Go to PDB code:  Tunnel analysis for: 1nby calculated with MOLE 2.0 PDB id 1nby Tunnels calculated on whole structure Tunnels calculated excluding ligands View options MOLEonline 2.0 manipulation and visualization with HETATM: without HETATM:   4 tunnels, coloured by tunnel radius 4 tunnels, coloured by tunnel radius 4 tunnels, coloured as in list below Tunnels are interior spaces connected with the protein surrounding. Only channels longer than 15 Å are shown. Tunnels Free R Length HPathy HPhob Polar Rel Mut Residue..type Ligands Radius 1 1.41 1.46 24.5 -0.48 -0.57 4.5 96 0 1 6 2 1 0 0   2 1.33 1.40 30.3 -1.15 0.00 12.5 75 3 1 3 3 5 0 0   3 1.44 1.71 30.6 -1.20 -0.05 13.6 81 3 1 4 3 4 0 0   4 1.31 2.17 17.8 -1.30 -0.22 8.8 86 2 0 5 3 2 0 0   Residue-type_colouring Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C Acknowledgement Tunnels were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.