PDBsum entry 1n8r

Pore analysis for: 1n8r calculated with

MOLE 2.0

PDB id

1n8r

Pores calculated on whole structure

Pores calculated excluding ligands

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30 pores, coloured by radius

30 pores, coloured as in
list below

Pores are connected internal spaces going through the structure. Only pores longer than 25 Å are shown.

Pores

Free R

Length

HPathy

HPhob

Polar

Rel Mut

Residue..type

Ligands

Radius

2.36

78.8

-1.11

-0.76

13.8

U 555 A C 563 A U 595 A C 596 A A 597 A C 598 A U
1266 A C 1267 A C 1268 A G 1269 A U 1270 A C 1272
A U 1279 A A 1280 A C 1281 A U 1282 A G 1283 A G
1284 A G 1299 A G 1300 A U 1347 A A 1348 A

1.19

1.32

98.0

-1.26

-0.53

19.5

C 31 A C 87 A U 335 A G 336 A A 462 A G 479 A C
480 A U 481 A G 482 A A 484 A A 495 A G 496 A A
498 A G 499 A G 506 A A 513 A G 514 A A 1390 A G
1391 A A 1392 A A 1427 A A 1434 A

2.20

100.2

-0.40

-0.80

3.4

A 542 A G 543 A U 555 A C 556 A C 557 A C 558 A C
594 A U 595 A C 596 A A 597 A C 598 A G 615 A U
616 A C 617 A G 1076 A G 1077 A A 1092 A G 1093 A
G 1100 A U 1101 A C 1105 A A 1106 A G 1110 A U
1111 A G 1112 A G 1113 A U 1122 A A 1123 A G 1239
A C 1245 A A 1246 A A 1247 A A 1248 A U 1249 A C
1250 A C 1253 A G 1258 A A 1259 A

2.56

102.8

-1.03

-0.78

14.2

A 1392 A G 1727 A G 1728 A A 2664 A U 2669 A G
2670 A U 2671 A C 2672 A A 2811 A A 2816 A G 2817
A A 2818 A C 2819 A G 2829 A U 2830 A C 2831 A C
2832 A C 2833 A C 2835 A G 2842 A A 2843 A C 2844
A G 2845 A C 2846 A

2.16

2.15

106.0

-1.07

-0.53

13.0

U 533 A C 534 A G 535 A A 536 A G 539 A A 540 A C
541 A A 542 A G 543 A U 555 A C 556 A C 557 A U
595 A C 596 A A 597 A C 598 A G 607 A A 608 A U
609 A U 611 A U 612 A C 613 A U 614 A A 2675 A A
2813 A A 2814 A G 2815 A C 2819 A

1.93

109.7

-0.98

-0.58

12.3

U 533 A C 534 A G 535 A A 536 A U 614 A G 615 A U
616 A C 617 A G 618 A G 1077 A A 1078 A G 1100 A
U 1101 A C 1105 A G 1110 A U 1111 A G 1112 A G
1113 A U 1122 A A 1123 A G 1239 A C 1245 A A 1246
A A 1247 A A 1248 A U 1249 A C 1250 A C 1253 A U
2078 A G 2079 A A 2675 A A 2813 A A 2814 A G 2815
A C 2819 A

2.38

2.39

117.2

-1.15

-0.73

15.7

U 555 A C 563 A U 595 A C 596 A A 597 A C 598 A G
911 A C 930 A C 931 A G 941 A U 942 A A 943 A A
1020 A C 1033 A G 1034 A G 1087 A A 1088 A G 1089
A C 1262 A C 1263 A U 1264 A G 1265 A U 1266 A C
1267 A G 1284 A U 1285 A A 1286 A A 1287 A G 1290
A

1.19

1.28

131.4

-0.65

-0.56

9.6

G 1235 A A 2083 A U 2550 A C 2560 A G 2578 A U
2655 A A 2675 A C 2676 A A 2677 A A 2678 A G 2679
A A 2680 A A 2681 A C 2682 A G 2683 A A 2691 A A
2694 A A 2702 A A 2703 A C 2704 A U 2705 A C 2769
A G 2770 A G 2771 A G 2798 A A 2799 A A 2800 A A
2801 A C 2802 A C 2803 A A 2805 A G 2809 A A 2813
A A 2814 A G 2815 A C 2819 A

1.87

128.4

-1.27

-0.74

16.6

C 18 A U 19 A G 20 A U 488 A A 495 A G 496 A A
497 A A 498 A G 499 A G 500 A G 501 A A 502 A G
503 A A 509 A U 510 A A 513 A U 548 A A 549 A C
550 A A 551 A A 552 A G 553 A G 554 A U 555 A C
598 A G 604 A G 1322 A G 1323 A A 1337 A U 1338 A
A 1390 A G 1391 A A 1392 A A 1427 A A 1434 A

2.08

139.7

-0.56

-0.79

5.4

C 541 A A 542 A G 615 A U 616 A C 617 A G 1076 A
G 1077 A G 1089 A A 1090 A U 1091 A A 1092 A G
1093 A G 1100 A U 1101 A C 1105 A A 1106 A G 1110
A U 1111 A G 1112 A G 1113 A U 1122 A A 1123 A G
1239 A C 1245 A A 1246 A A 1247 A A 1248 A U 1249
A C 1250 A C 1253 A G 1258 A A 1259 A G 1260 A A
1261 A C 1262 A C 1263 A U 1264 A G 1265 A U 1266
A C 1267 A C 1268 A G 1269 A U 1270 A C 1272 A U
1279 A A 1280 A C 1281 A U 1282 A G 1283 A G 1284
A U 1285 A A 1286 A A 1287 A G 1299 A G 1300 A U
1347 A A 1348 A

1.24

1.47

153.0

-0.97

-0.62

14.4

C 18 A U 19 A G 20 A C 31 A C 87 A U 335 A G 336
A A 462 A G 479 A C 480 A U 481 A G 482 A A 484 A
U 488 A A 497 A A 498 A G 499 A G 500 A G 501 A A
502 A G 503 A G 506 A A 509 A U 510 A A 513 A G
514 A U 548 A A 549 A C 550 A A 551 A A 552 A G
553 A G 554 A U 555 A C 598 A G 604 A G 1322 A G
1323 A A 1337 A U 1338 A A 1427 A

1.17

2.38

159.5

-0.41

-0.43

8.5

G 1024 A C 1025 A G 1100 A U 1101 A G 1110 A U
1111 A G 1112 A G 1113 A G 1223 A G 1224 A C 1245
A A 1246 A A 1247 A A 1248 A U 1249 A C 1250 A C
1251 A A 1252 A C 1253 A G 3078 B U 3079 B A 3080
B U 3082 B G 3088 B C 3095 B C 3096 B U 3097 B U
3099 B G 3100 B G 3101 B G 3102 B

1.24

1.47

162.2

-1.10

-0.72

14.1

C 31 A G 32 A G 33 A U 35 A C 36 A A 37 A G 50 A
C 62 A U 63 A C 85 A A 86 A C 87 A A 151 A G 209
A U 335 A G 336 A C 440 A A 441 A A 442 A C 443 A
A 459 A C 461 A G 464 A G 482 A A 484 A G 506 A U
645 A G 646 A U 647 A G 648 A A 665 A A 666 A A
750 A U 751 A G 752 A U 753 A U 1279 A G 1300 A A
1348 A G 1349 A U 1350 A G 1351 A C 1353 A NA
8304 E

1.65

168.5

-0.67

-0.76

6.7

G 13 A C 14 A C 15 A A 16 A G 17 A U 27 A U 522 A
U 1279 A G 1300 A C 1301 A G 1302 A C 1303 A U
1304 A C 1305 A G 1319 A U 1320 A A 1321 A G 1322
A A 1331 A C 1332 A G 1344 A A 1345 A U 1346 A U
1347 A A 1348 A G 1349 A U 1350 A C 1366 A A 1367
A C 2061 A A 2062 A U 2063 A C 2084 A A 2085 A C
2086 A C 2087 A C 2651 A U 2652 A A 2653 A C 2654
A U 2655 A G 2657 A G 2658 A U 2659 A A 2664 A U
2669 A G 2670 A U 2671 A C 2672 A A 2811 A A 2812
A A 2816 A G 2817 A A 2818 A C 2819 A C 2844 A MG
8109 Z

1.24

1.47

168.9

-1.13

-0.73

14.5

C 31 A G 32 A G 33 A U 35 A G 50 A C 62 A U 63 A
C 85 A A 86 A C 87 A A 151 A C 153 A A 174 A U
176 A A 177 A C 208 A G 213 A U 214 A G 223 A U
224 A G 225 A U 335 A G 336 A C 440 A A 441 A A
442 A C 443 A A 459 A C 461 A G 464 A G 482 A A
484 A G 506 A U 647 A G 648 A U 649 A C 650 A U
651 A C 725 A C 726 A G 740 A C 741 A G 742 A C
757 A A 758 A C 759 A A 1020 A G 1036 A G 1037 A
U 2387 A C 2396 A

1.98

1.99

186.5

-0.68

-0.77

7.2

U 1561 A C 1562 A A 1729 A G 1730 A A 2664 A U
2669 A G 2670 A U 2671 A C 2672 A G 2730 A G 2731
A U 2732 A U 2733 A G 2740 A A 2741 A G 2742 A A
2743 A A 2811 A A 2816 A G 2817 A A 2818 A C 2819
A G 2829 A U 2830 A C 2831 A C 2832 A C 2833 A G
2834 A C 2835 A G 2836 A G 2842 A A 2843 A C 2844
A G 2845 A C 2846 A A 2854 A G 2855 A A 2856 A C
2857 A U 2858 A C 2859 A C 2870 A G 2871 A C 2881
A G 2882 A A 2883 A G 2884 A C 2893 A C 2894 A C
2895 A A 2896 A C 2897 A G 2898 A

1.20

2.23

193.4

-0.89

-0.57

13.1

U 555 A C 563 A U 595 A C 596 A A 597 A C 598 A G
911 A C 930 A C 931 A A 943 A G 944 A U 945 A C
946 A U 947 A C 1015 A U 1017 A A 1018 A C 1019 A
G 1024 A C 1025 A U 1066 A G 1087 A A 1088 A G
1089 A C 1262 A C 1263 A U 1264 A G 1265 A U 1266
A C 1267 A G 1284 A U 1285 A A 1286 A A 1287 A G
1290 A C 2393 A G 3100 B G 3101 B

2.16

189.8

-0.66

-0.67

9.0

A 913 A A 914 A C 915 A A 929 A C 930 A G 941 A U
942 A A 943 A A 1020 A G 1034 A G 1046 A U 1047 A
G 1048 A C 1049 A C 1051 A A 1058 A G 1059 A C
1060 A C 1061 A U 1062 A G 1063 A U 1064 A G 1065
A U 1066 A U 1120 A C 1126 A C 1127 A U 1128 A C
1129 A U 1130 A A 1231 A A 1232 A G 1235 A A 1236
A U 1237 A C 1238 A G 2068 A A 2083 A C 2393 A U
2492 A C 2493 A G 2524 A G 2525 A U 2550 A C 2551
A C 2552 A A 2577 A G 2578 A U 2655 A A 2675 A C
2676 A A 2677 A A 2678 A G 2679 A G 2809 A A 2813
A A 2814 A G 2815 A C 2819 A MG 8025 A C 3091 B G
3092 B A 3093 B

1.87

201.7

-0.92

-0.76

10.6

C 18 A U 19 A G 20 A C 31 A G 44 A G 47 A A 48 A
A 49 A C 62 A U 63 A G 64 A C 65 A C 85 A A 86 A
C 101 A A 102 A U 103 A G 104 A G 105 A U 107 A U
108 A U 109 A C 110 A C 111 A G 116 A C 124 A U
125 A A 128 A A 129 A C 443 A C 444 A C 461 A A
462 A G 479 A C 480 A U 488 A A 497 A A 498 A G
499 A G 500 A G 501 A A 502 A G 503 A A 509 A U
510 A A 513 A G 514 A U 548 A A 549 A C 550 A A
551 A A 552 A G 553 A G 554 A U 555 A C 598 A G
604 A G 1322 A G 1323 A A 1337 A U 1338 A A 1427
A U 1673 A NA 8329 A

1.20

1.28

210.5

-0.77

-0.66

10.3

A 16 A G 17 A C 18 A U 19 A G 20 A G 21 A U 22 A
G 24 A C 31 A C 87 A U 335 A G 336 A A 462 A G
479 A C 480 A U 481 A G 482 A A 484 A G 499 A G
506 A U 510 A G 512 A A 513 A G 514 A C 515 A G
518 A A 519 A A 520 A A 521 A U 522 A A 536 A G
539 A A 540 A G 610 A U 611 A U 612 A C 613 A U
614 A G 615 A U 616 A C 617 A G 618 A G 1077 A A
1078 A G 1100 A U 1101 A C 1105 A G 1110 A U 1111
A G 1112 A G 1113 A U 1122 A A 1123 A G 1239 A C
1245 A A 1246 A A 1247 A A 1248 A U 1249 A C 1250
A C 1253 A G 1322 A A 1427 A U 2078 A G 2079 A MG
8089 A MG 8109 Z

2.04

213.5

-0.69

-0.75

5.9

U 555 A C 556 A C 557 A U 595 A C 596 A A 597 A C
598 A G 607 A A 608 A U 609 A A 635 A G 636 A C
637 A C 638 A A 639 A G 640 A A 788 A C 789 A U
825 A A 827 A G 828 A A 829 A G 830 A U 831 A C
839 A U 845 A A 846 A C 847 A C 848 A U 850 A U
1320 A A 1321 A G 1322 A G 1323 A G 1324 A G 1325
A U 1326 A A 1331 A C 1332 A U 1333 A A 1355 A A
1356 A A 1357 A C 1360 A C 1361 A U 1362 A G 1363
A G 1364 A A 1406 A A 1407 A U 1408 A C 1534 A G
1535 A C 1536 A C 1537 A U 1539 A A 1642 A C 1643
A U 1645 A G 1646 A G 1647 A G 1655 A A 1682 A G
1695 A U 1696 A G 1697 A U 1698 A C 1699 A C 1700
A A 1701 A G 1837 A U 1838 A C 2056 A G 2099 A A
2100 A C 2644 A U 2645 A G 2646 A MG 8063 A NA
8363 A NA 8379 A

1.19

1.26

230.6

-0.84

-0.72

10.4

A 542 A G 543 A U 555 A C 556 A C 557 A C 558 A C
594 A U 595 A C 596 A A 597 A C 598 A G 615 A U
616 A C 617 A G 1076 A G 1077 A A 1092 A G 1093 A
G 1100 A U 1101 A C 1105 A A 1106 A G 1119 A U
1120 A G 1121 A U 1122 A A 1123 A A 1124 A G 1131
A G 1226 A C 1227 A C 1228 A A 1230 A A 1231 A G
1239 A U 1249 A C 1250 A G 1258 A A 1259 A C 2560
A A 2691 A A 2694 A A 2702 A A 2703 A C 2704 A U
2705 A G 2771 A G 2772 A G 2773 A U 2774 A A 2775
A A 2776 A A 2792 A A 2793 A G 2794 A C 2795 A U
2796 A C 2797 A G 2798 A G 3088 B C 3089 B G 3090
B C 3091 B

1.18

1.24

228.0

-1.01

-0.66

13.6

C 31 A C 87 A U 335 A G 336 A A 462 A G 479 A C
480 A U 481 A G 482 A A 484 A A 495 A A 497 A G
506 A G 514 A U 1388 A G 1389 A A 1390 A G 1410 A
A 1411 A C 1421 A U 1422 A C 1423 A A 1424 A G
1425 A C 1426 A U 1435 A C 1436 A A 1437 A G 1438
A G 1441 A G 1497 A U 1503 A A 1504 A U 1505 A C
1545 A G 1546 A A 1547 A U 1548 A C 1549 A A 1550
A C 1551 A U 1561 A C 1562 A G 1563 A C 1564 A C
1565 A C 1566 A A 1567 A G 1568 A U 1569 A C 1680
A A 1685 A A 1717 A C 1720 A A 2739 A G 2740 A C
2870 A G 2871 A C 2881 A G 2882 A MG 8029 A

1.84

233.1

-0.84

-0.73

8.5

U 468 A U 555 A C 556 A C 557 A U 595 A C 596 A A
597 A C 598 A G 607 A A 608 A U 609 A A 635 A G
636 A C 637 A C 638 A A 639 A G 640 A A 767 A U
768 A C 769 A C 770 A G 771 A G 772 A A 773 A A
844 A U 866 A A 867 A G 868 A G 869 A A 882 A U
883 A G 887 A U 888 A C 889 A C 890 A U 1320 A A
1321 A G 1322 A G 1323 A G 1324 A G 1325 A U 1326
A A 1331 A C 1332 A U 1333 A A 1355 A A 1356 A A
1357 A C 1360 A C 1361 A U 1362 A G 1363 A G 1364
A A 1459 A G 1460 A U 1461 A C 1474 A G 1475 A A
1476 A C 1477 A U 1478 A A 1479 A A 1857 A A 1858
A A 1859 A C 1861 A C 1862 A G 1863 A C 1864 A G
1867 A G 1868 A C 1870 A U 1871 A C 1872 A C 2056
A G 2125 A C 2126 A U 2127 A C 2247 A C 2248 A A
2260 A C 2261 A C 2262 A MG 8063 A NA 8363 A

2.01

1.99

242.2

-0.45

-0.65

5.4

G 1235 A G 1896 A U 1897 A G 1898 A G 1933 A A
2083 A U 2117 A C 2119 A U 2120 A C 2269 A G 2270
A G 2279 A G 2285 A G 2286 A C 2287 A G 2288 A U
2461 A A 2463 A A 2469 A A 2470 A G 2471 A C 2472
A C 2487 A C 2526 A U 2527 A U 2528 A G 2529 A C
2530 A C 2542 A G 2544 A C 2549 A U 2550 A G 2579
A G 2580 A U 2590 A A 2604 A G 2605 A C 2608 A G
2609 A C 2629 A G 2630 A U 2631 A G 2632 A A 2635
A A 2637 A U 2655 A A 2675 A C 2676 A A 2677 A A
2678 A G 2679 A A 2680 A G 2809 A A 2813 A A 2814
A G 2815 A C 2819 A MG 8111 A

1.93

242.5

-0.93

-0.77

10.4

U 555 A C 563 A U 595 A C 596 A A 597 A C 598 A G
911 A C 930 A C 931 A A 943 A G 944 A U 945 A C
946 A U 947 A G 948 A U 949 A G 950 A G 952 A G
960 A A 961 A A 1012 A A 1013 A A 1014 A C 1015 A
U 1017 A A 1018 A C 1019 A U 1066 A G 1087 A A
1088 A G 1089 A C 1262 A C 1263 A U 1264 A G 1265
A U 1266 A C 1267 A G 1284 A U 1285 A A 1286 A A
1287 A G 1290 A C 2351 A G 2352 A C 2393 A U 3001
B G 3014 B C 3015 B G 3016 B G 3017 B G 3058 B C
3059 B C 3060 B C 3061 B A 3062 B C 3067 B G 3068
B U 3069 B U 3070 B C 3071 B C 3072 B G 3102 B A
3103 B A 3104 B A 3105 B C 3106 B G 3114 B C 3115
B C 3116 B

1.77

1.78

242.4

-0.72

-0.74

6.2

U 555 A C 556 A C 557 A U 595 A C 596 A A 597 A C
598 A G 607 A A 608 A U 609 A A 635 A G 636 A C
637 A C 638 A A 639 A G 640 A U 825 A G 828 A G
830 A U 831 A C 839 A U 845 A A 846 A C 847 A C
848 A U 850 A U 1320 A A 1321 A G 1322 A G 1323 A
G 1324 A G 1325 A U 1326 A A 1331 A C 1332 A U
1333 A A 1355 A A 1356 A A 1357 A C 1360 A C 1361
A U 1362 A G 1363 A G 1364 A G 1378 A A 1379 A A
1381 A C 1403 A C 1404 A U 1405 A A 1407 A U 1561
A C 1562 A G 1713 A C 1714 A G 1837 A U 1838 A C
2056 A G 2099 A A 2100 A C 2644 A U 2645 A G 2646
A C 2728 A C 2729 A G 2730 A G 2731 A U 2732 A U
2733 A G 2740 A A 2741 A G 2742 A A 2743 A G 2744
A C 2745 A A 2746 A C 2747 A G 2748 A U 2749 A G
2750 A C 2870 A G 2871 A C 2881 A G 2882 A A 2883
A G 2884 A MG 8024 A MG 8048 A MG 8063 A NA 8363
A NA 8379 A

1.19

1.27

256.3

-0.79

-0.54

12.1

G 1024 A C 1025 A G 1119 A U 1120 A G 1121 A G
1131 A A 1132 A A 1133 A G 1223 A G 1224 A C 1225
A G 1226 A C 1227 A C 1228 A A 1230 A A 1231 A C
2560 A A 2691 A A 2694 A A 2702 A A 2703 A C 2704
A U 2705 A G 2771 A G 2772 A G 2773 A U 2774 A A
2775 A A 2776 A A 2792 A A 2793 A G 2794 A C 2795
A U 2796 A C 2797 A G 2798 A G 3078 B U 3079 B A
3080 B U 3082 B G 3090 B C 3091 B G 3092 B C 3095
B C 3096 B U 3097 B U 3099 B G 3100 B G 3101 B G
3102 B

1.80

256.7

-0.77

-0.68

8.8

G 958 A C 959 A G 960 A A 961 A C 1000 A U 1001 A
G 1002 A U 1003 A U 1120 A G 1121 A G 1131 A A
1132 A A 1133 A G 1223 A G 1224 A C 1225 A G 1226
A C 1227 A C 1228 A A 1230 A A 1231 A A 1232 A G
1235 A A 1236 A A 2083 A C 2351 A G 2352 A U 2550
A C 2551 A C 2552 A A 2577 A G 2578 A U 2655 A A
2675 A C 2676 A A 2677 A A 2678 A G 2679 A G 2809
A A 2813 A A 2814 A G 2815 A C 2819 A C 3015 B G
3016 B G 3017 B U 3018 B G 3019 B G 3020 B G 3021
B A 3056 B A 3057 B G 3058 B C 3067 B G 3068 B U
3069 B A 3077 B U 3079 B A 3080 B G 3090 B C 3091
B G 3092 B C 3095 B C 3096 B A 3105 B C 3106 B C
3107 B C 3108 B

1.19

1.29

258.1

-0.93

-0.59

12.5

C 31 A C 87 A U 335 A G 336 A A 462 A A 466 A G
467 A A 476 A G 479 A C 480 A U 481 A G 482 A A
484 A G 506 A G 514 A U 845 A A 1427 A C 1428 A G
2099 A A 2100 A G 2102 A A 2103 A A 2486 A C 2487
A C 2496 A A 2497 A C 2498 A C 2526 A U 2527 A U
2528 A G 2540 A U 2541 A C 2542 A C 2555 A C 2556
A U 2557 A G 2558 A C 2559 A C 2560 A A 2569 A G
2570 A C 2571 A U 2590 A C 2591 A G 2592 A C 2593
A A 2600 A A 2601 A G 2602 A G 2603 A A 2604 A C
2608 A U 2619 A U 2620 A A 2637 A C 2644 A U 2645
A G 2646 A A 2691 A A 2694 A A 2702 A A 2703 A C
2704 A VIR 9403 A

Residue-type_colouring

Positive	Negative	Neutral	Aliphatic	Aromatic	Pro & Gly	Cysteine
H,K,R	D,E	S,T,N,Q	A,V,L,I,M	F,Y,W	P,G	C

Acknowledgement

Pores were calculated by

MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.