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PDBsum entry 1n5y
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Top Page protein dna_rna metals Protein-protein interface(s) pores links
Pore analysis for: 1n5y calculated with MOLE 2.0 PDB id
1n5y
Pores calculated on whole structure Pores calculated excluding ligands
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24 pores, coloured by radius 30 pores, coloured by radius 30 pores, coloured as in
list below
Pores are connected internal spaces going through the structure. Only pores longer than 25 Å are shown.
Pores
Free R
Length
HPathy
HPhob
Polar
Rel Mut
Residue..type
Ligands
Radius
1 2.26 2.37 30.6 -1.04 -0.11 19.4 77 5 1 2 3 2 0 0  
2 1.12 1.38 42.4 1.18 0.28 4.7 84 2 0 4 10 0 0 0  DC 803 P DT 724 T DG 725 T
3 1.23 1.44 42.8 0.05 0.25 15.6 72 4 2 0 6 1 0 0  
4 1.17 1.19 43.4 1.95 0.61 2.5 68 1 0 1 9 1 0 1  DG 816 P MRG 817 P DC 818 P DC 711 T DC 712 T DG
714 T DA 715 T DA 716 T
5 2.17 3.09 53.1 -2.19 -0.68 27.3 80 4 3 3 3 1 0 0  DT 810 P DG 714 T DA 715 T
6 2.09 2.45 55.8 -1.81 -0.44 22.2 73 5 4 1 3 2 3 0  DC 803 P DA 804 P DG 719 T DG 720 T DG 721 T DA
722 T DC 723 T DT 724 T DG 725 T
7 1.33 2.40 64.2 -1.79 -0.34 14.8 81 3 5 6 1 1 3 0  
8 1.69 2.95 70.7 -1.04 -0.55 15.7 80 3 5 0 2 1 1 0  DT 813 P DC 814 P DG 815 P DG 816 P MRG 817 P DC
818 P DA 706 T DG 707 T DG 708 T DC 709 T DG 710
T DC 711 T DG 714 T DA 715 T DA 716 T
9 1.86 4.71 72.4 -1.60 -0.28 14.3 64 4 4 4 1 8 2 0  DC 803 P DG 720 T DG 721 T DA 722 T DC 723 T DT
724 T DG 725 T
10 1.34 1.34 74.9 -1.68 -0.52 23.2 79 6 6 1 4 2 1 0  DT 810 P DG 811 P DT 812 P DT 813 P DC 814 P DG
710 T DG 714 T DA 715 T
11 1.66 2.96 77.4 -1.55 -0.50 22.0 78 7 9 1 3 2 1 0  DT 813 P DC 814 P DG 710 T DA 718 T DG 719 T
12 1.47 1.47 82.4 -1.37 -0.59 18.2 77 3 1 1 4 1 0 0  DT 810 P DG 811 P DT 812 P DT 813 P DC 814 P DG
815 P DG 816 P MRG 817 P DC 818 P DA 706 T DG 707
T DG 708 T DC 709 T DG 710 T DC 711 T DC 712 T DG
714 T DA 715 T DA 716 T
13 1.67 2.98 84.5 -1.11 -0.50 18.9 81 5 8 0 4 1 2 0  DC 803 P DA 804 P DT 813 P DC 814 P DG 710 T DA
718 T DG 719 T DG 720 T DG 721 T DA 722 T DC 723
T DT 724 T DG 725 T
14 1.28 1.52 88.1 0.48 0.09 9.5 74 3 3 1 9 2 1 1  DT 813 P DC 814 P DG 815 P DG 816 P MRG 817 P DC
818 P DA 706 T DG 707 T DG 708 T DC 709 T DG 710
T DC 711 T DC 712 T
15 1.17 1.80 89.6 1.07 0.41 9.8 70 5 2 1 10 2 0 1  DG 816 P MRG 817 P DC 818 P DC 821 P ATM 822 P DT
705 T DA 706 T DC 711 T DC 712 T
16 1.38 1.38 89.6 -2.05 -0.61 26.5 81 9 8 1 1 1 1 0  DT 810 P DT 812 P DT 813 P DC 814 P DG 710 T DG
714 T DA 715 T
17 1.52 1.52 91.6 -1.59 -0.57 21.3 75 7 6 1 2 1 0 0  DC 814 P DG 815 P DG 816 P MRG 817 P DC 818 P DA
706 T DG 707 T DG 708 T DG 714 T DA 715 T DA 716
T DA 718 T DG 719 T
18 1.71 2.97 92.9 -0.96 -0.37 17.2 79 6 5 0 3 2 1 0  DT 813 P DC 814 P DG 815 P DG 816 P MRG 817 P DC
818 P DC 821 P ATM 822 P DT 705 T DA 706 T DG 707
T DG 708 T DC 709 T DG 710 T DC 711 T
19 1.19 1.19 94.2 -2.00 -0.72 24.5 80 6 3 2 1 0 0 0  DT 810 P DT 812 P DT 813 P DC 814 P DG 815 P DG
816 P MRG 817 P DC 818 P DA 706 T DG 707 T DG 708
T DC 709 T DG 710 T DC 711 T DC 712 T DG 714 T DA
715 T DA 716 T
20 1.52 1.52 97.4 -1.21 -0.59 18.3 79 5 5 0 3 0 1 0  DC 803 P DA 804 P DC 814 P DG 815 P DG 816 P MRG
817 P DC 818 P DA 706 T DG 707 T DG 708 T DG 714
T DA 715 T DA 716 T DA 718 T DG 719 T DG 720 T DG
721 T DA 722 T DC 723 T DT 724 T DG 725 T
21 1.26 1.26 107.0 -2.29 -0.65 28.6 78 10 8 3 2 1 0 0  DT 810 P DT 812 P DT 813 P DC 814 P DG 710 T DG
714 T DA 715 T DA 718 T DG 719 T
22 1.36 1.36 107.6 -1.48 -0.41 22.9 76 7 3 1 5 2 0 0  DT 810 P DG 811 P DT 812 P DT 813 P DC 814 P DG
815 P DG 816 P MRG 817 P DC 818 P DC 821 P ATM
822 P DT 705 T DA 706 T DG 707 T DG 708 T DC 709
T DG 710 T DC 711 T DC 712 T DG 714 T DA 715 T
23 1.19 1.30 116.8 -0.82 -0.16 16.9 74 9 9 2 11 8 3 0  
24 2.34 4.07 116.8 -1.64 -0.46 23.7 76 10 8 1 3 2 0 0  DC 814 P DG 815 P DG 816 P MRG 817 P DC 818 P DC
821 P ATM 822 P DT 705 T DA 706 T DG 707 T DG 708
T DA 718 T DG 719 T
25 1.28 1.60 117.9 -0.16 -0.11 15.1 73 6 5 1 10 1 1 1  DC 803 P DA 804 P DC 814 P DG 815 P DG 816 P MRG
817 P DC 818 P DA 706 T DG 707 T DG 708 T DC 711
T DC 712 T DA 718 T DG 719 T DG 720 T DG 721 T DA
722 T DC 723 T DT 724 T DG 725 T
26 1.56 1.56 122.3 -1.88 -0.54 26.1 79 10 5 1 2 1 0 0  DT 810 P DT 812 P DT 813 P DC 814 P DG 815 P DG
816 P MRG 817 P DC 818 P DC 821 P ATM 822 P DT
705 T DA 706 T DG 707 T DG 708 T DC 709 T DG 710
T DC 711 T DC 712 T DG 714 T DA 715 T
27 2.93 2.93 122.6 -1.34 -0.48 21.8 78 9 7 0 4 1 1 0  DC 803 P DA 804 P DC 814 P DG 815 P DG 816 P MRG
817 P DC 818 P DC 821 P ATM 822 P DT 705 T DA 706
T DG 707 T DG 708 T DA 718 T DG 719 T DG 720 T DG
721 T DA 722 T DC 723 T DT 724 T DG 725 T
28 1.27 1.25 128.2 -1.68 -0.48 16.6 76 9 6 6 4 5 1 0  DT 810 P DG 811 P DG 714 T DA 715 T DG 721 T
29 1.18 1.34 174.9 -2.55 -0.64 28.6 77 9 12 5 1 2 4 0  
30 1.21 1.77 175.1 -1.88 -0.42 24.4 74 12 12 4 5 5 4 0  

Residue-type_colouring
Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine
H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C

Acknowledgement
Pores were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.
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