 |
PDBsum entry 1n4r
|
|
|
|
 |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
 |
|
|
|
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
|
|
|
|
|
|
|
|
|
|
Pore analysis for: 1n4r calculated with MOLE 2.0
|
PDB id
|
|
|
|
1n4r
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
 |
Pores calculated on whole structure |
 |
Pores calculated excluding ligands
|
|
|
 |
 |
 |
 |
 |
|
 |
|
|
|
 |
 |
|
 |
|
|
|
 |
19 pores,
coloured by radius |
 |
24 pores,
coloured by radius
|
24 pores,
coloured as in list below
|
|
|
 |
 |
 |
Pores are connected internal spaces going through the structure. Only pores longer than 25 Å are shown. |
|
|
 |
|
|
|
 |
Free R
|
 |
|
|
|
|
 |
Length
|
 |
|
|
|
|
 |
HPathy
|
 |
|
|
|
|
 |
HPhob
|
 |
|
|
|
|
 |
Polar
|
 |
|
|
|
|
 |
Rel Mut
|
 |
|
|
|
|
 |
Residue..type
|
 |
|
|
|
|
 |
Ligands
|
 |
|
|
|
|
|
 |
Radius |
 |
1 |
 |
3.25 |
3.55 |
25.5 |
-1.09 |
0.12 |
18.2 |
77 |
 |
3 |
1 |
1 |
3 |
1 |
0 |
0 |
 |
|
 |
 |
2 |
 |
2.86 |
2.93 |
43.4 |
-2.45 |
-0.64 |
30.8 |
89 |
9 |
4 |
3 |
2 |
0 |
0 |
0 |
|
 |
3 |
 |
1.39 |
2.72 |
48.3 |
-2.58 |
-0.17 |
27.1 |
70 |
9 |
2 |
3 |
0 |
5 |
1 |
1 |
MES 904 G SO4 813 H GER 1408 P
|
 |
4 |
 |
2.42 |
2.42 |
70.2 |
-2.03 |
-0.49 |
27.4 |
78 |
8 |
8 |
4 |
2 |
3 |
0 |
0 |
|
 |
5 |
 |
1.59 |
2.71 |
73.5 |
-2.11 |
-0.22 |
25.2 |
71 |
13 |
4 |
3 |
2 |
6 |
1 |
2 |
MES 902 C SO4 811 D GER 1208 N
|
 |
6 |
 |
1.46 |
1.57 |
73.4 |
-0.72 |
-0.08 |
20.5 |
78 |
8 |
9 |
3 |
10 |
5 |
0 |
1 |
|
 |
7 |
 |
1.62 |
1.92 |
73.7 |
-2.74 |
-0.46 |
30.1 |
86 |
9 |
7 |
6 |
3 |
1 |
1 |
0 |
|
 |
8 |
 |
3.75 |
4.35 |
77.4 |
-2.41 |
-0.55 |
30.8 |
77 |
9 |
11 |
6 |
1 |
4 |
0 |
0 |
|
 |
9 |
 |
1.49 |
2.62 |
79.2 |
-2.59 |
-0.40 |
30.3 |
71 |
12 |
9 |
4 |
1 |
6 |
1 |
2 |
MES 903 E SO4 812 F GER 1308 O
|
 |
10 |
 |
1.44 |
2.63 |
79.6 |
-2.17 |
-0.37 |
26.6 |
72 |
13 |
6 |
2 |
2 |
5 |
1 |
2 |
MES 903 E SO4 812 F GER 1308 O
|
 |
11 |
 |
1.23 |
2.06 |
79.3 |
-2.32 |
-0.41 |
25.4 |
72 |
11 |
8 |
5 |
2 |
7 |
1 |
1 |
MES 902 C SO4 811 D GER 1208 N
|
 |
12 |
 |
1.16 |
2.16 |
101.7 |
-0.27 |
0.21 |
11.2 |
77 |
6 |
3 |
7 |
12 |
9 |
2 |
1 |
|
 |
13 |
 |
1.73 |
2.63 |
99.7 |
-2.32 |
-0.21 |
26.4 |
76 |
15 |
5 |
5 |
2 |
6 |
3 |
1 |
MES 905 I SO4 814 J GER 1508 Q
|
 |
14 |
 |
1.21 |
2.04 |
109.1 |
-2.03 |
-0.32 |
24.3 |
73 |
14 |
9 |
7 |
2 |
9 |
1 |
1 |
MES 902 C SO4 811 D GER 1208 N
|
 |
15 |
 |
1.45 |
2.62 |
111.7 |
-1.99 |
-0.35 |
25.4 |
72 |
15 |
8 |
6 |
2 |
8 |
1 |
2 |
MES 903 E SO4 812 F GER 1308 O
|
 |
16 |
 |
1.26 |
2.05 |
121.1 |
-2.29 |
-0.28 |
24.8 |
70 |
17 |
8 |
7 |
2 |
11 |
2 |
2 |
MES 902 C SO4 811 D MES 903 E SO4 812 F GER 1208 N GER 1308 O
|
 |
17 |
 |
1.67 |
2.78 |
197.4 |
-2.32 |
-0.41 |
27.5 |
76 |
20 |
17 |
9 |
6 |
10 |
1 |
1 |
MES 906 K SO4 815 L GER 1608 R
|
 |
18 |
 |
1.44 |
1.63 |
201.9 |
-1.85 |
-0.42 |
25.9 |
80 |
17 |
20 |
9 |
10 |
6 |
0 |
1 |
|
 |
19 |
 |
1.54 |
1.88 |
229.0 |
-2.08 |
-0.40 |
26.3 |
81 |
21 |
19 |
14 |
12 |
4 |
2 |
1 |
|
 |
20 |
 |
1.47 |
1.66 |
247.9 |
-1.58 |
-0.36 |
21.1 |
84 |
19 |
15 |
18 |
16 |
4 |
2 |
2 |
|
 |
21 |
 |
1.32 |
2.79 |
243.4 |
-2.05 |
-0.36 |
22.7 |
80 |
21 |
12 |
18 |
12 |
8 |
3 |
2 |
MES 906 K SO4 815 L GER 1608 R
|
 |
22 |
 |
1.43 |
1.55 |
274.2 |
-1.71 |
-0.38 |
23.3 |
83 |
26 |
19 |
18 |
17 |
6 |
2 |
2 |
CL 801 C
|
 |
23 |
 |
1.42 |
3.84 |
263.4 |
-1.98 |
-0.43 |
24.9 |
81 |
19 |
20 |
16 |
13 |
4 |
2 |
1 |
|
 |
24 |
 |
1.54 |
1.90 |
269.7 |
-2.01 |
-0.37 |
24.2 |
79 |
28 |
16 |
18 |
13 |
10 |
3 |
2 |
MES 906 K SO4 815 L GER 1608 R
|
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
Residue-type_colouring |
 |
|
 |
|
Positive
|
Negative
|
Neutral
|
Aliphatic
|
Aromatic
|
Pro & Gly
|
Cysteine
|
|
H,K,R
|
D,E
|
S,T,N,Q
|
A,V,L,I,M
|
F,Y,W
|
P,G
|
C
|
|
|
 |