PDBsum entry 1mqd Go to PDB code:  Tunnel analysis for: 1mqd calculated with MOLE 2.0 PDB id 1mqd Tunnels calculated on whole structure Tunnels calculated excluding ligands View options MOLEonline 2.0 manipulation and visualization with HETATM: without HETATM:   1 tunnel, coloured by tunnel radius 8 tunnels, coloured by tunnel radius 8 tunnels, coloured as in list below Tunnels are interior spaces connected with the protein surrounding. Only channels longer than 15 Å are shown. Tunnels Free R Length HPathy HPhob Polar Rel Mut Residue..type Ligands Radius 1 1.16 1.36 19.7 -0.33 -0.29 8.7 84 2 1 1 1 1 0 0  SHI 3003 C 2 1.14 1.31 23.0 -0.51 -0.34 8.8 87 1 2 2 1 1 0 0  SHI 3003 C 3 1.14 1.31 23.2 0.35 -0.03 2.7 86 0 1 1 3 1 0 0  SHI 3003 C 4 1.15 1.30 27.6 -0.01 -0.22 6.8 92 0 2 2 3 1 0 0  SHI 3002 B 5 1.16 1.32 35.6 -1.01 -0.41 13.6 86 3 1 2 1 2 0 0  SHI 3002 B 6 1.17 1.37 57.6 -1.86 -0.40 25.1 84 7 3 3 1 1 1 0  SHI 3003 C 7 1.12 1.32 21.8 0.31 -0.08 3.4 83 0 1 1 3 1 0 0  SHI 3004 D 8 1.48 3.44 16.3 -1.76 0.00 19.1 73 2 0 1 1 2 0 0   Residue-type_colouring Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C Acknowledgement Tunnels were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.