PDBsum entry 1mj4 Go to PDB code:  Tunnel analysis for: 1mj4 calculated with MOLE 2.0 PDB id 1mj4 Tunnels calculated on whole structure Tunnels calculated excluding ligands View options MOLEonline 2.0 manipulation and visualization with HETATM: without HETATM:   0 tunnels, coloured by tunnel radius 5 tunnels, coloured by tunnel radius 5 tunnels, coloured as in list below Tunnels are interior spaces connected with the protein surrounding. Only channels longer than 15 Å are shown. Tunnels Free R Length HPathy HPhob Polar Rel Mut Residue..type Ligands Radius 1 1.23 1.29 15.5 1.17 0.73 4.5 71 2 0 0 7 3 0 0  HEM 502 A 2 1.21 1.42 19.6 3.20 1.11 1.2 75 1 0 0 10 2 0 0  HEM 502 A 3 1.21 1.34 19.6 0.50 0.59 10.7 74 3 0 0 6 3 0 0  HEM 502 A 4 1.21 1.43 20.2 3.13 1.08 1.9 76 2 0 0 10 2 0 0  HEM 502 A 5 1.21 1.35 20.3 0.63 0.59 10.8 74 3 0 0 6 3 0 0  HEM 502 A Residue-type_colouring Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C Acknowledgement Tunnels were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.