PDBsum entry 1mj2 Go to PDB code:  Tunnel analysis for: 1mj2 calculated with MOLE 2.0 PDB id 1mj2 Tunnels calculated on whole structure Tunnels calculated excluding ligands View options MOLEonline 2.0 manipulation and visualization with HETATM: without HETATM:   2 tunnels, coloured by tunnel radius 3 tunnels, coloured by tunnel radius 3 tunnels, coloured as in list below Tunnels are interior spaces connected with the protein surrounding. Only channels longer than 15 Å are shown. Tunnels Free R Length HPathy HPhob Polar Rel Mut Residue..type Ligands Radius 1 1.57 1.95 27.6 -2.00 -0.24 18.1 73 5 3 1 0 2 3 0   2 1.57 1.87 29.1 -2.26 -0.27 23.6 73 6 3 1 0 2 3 0   3 1.29 1.46 28.4 -1.86 -0.09 18.9 65 4 1 1 1 3 4 0   Residue-type_colouring Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C Acknowledgement Tunnels were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.