PDBsum entry 1mdy Go to PDB code:  Pore analysis for: 1mdy calculated with MOLE 2.0 PDB id 1mdy Pores calculated on whole structure Pores calculated excluding ligands View options MOLEonline 2.0 manipulation and visualization with HETATM: without HETATM:   8 pores, coloured by radius 8 pores, coloured by radius 8 pores, coloured as in list below Pores are connected internal spaces going through the structure. Only pores longer than 25 Å are shown. Pores Free R Length HPathy HPhob Polar Rel Mut Residue..type Ligands Radius 1 1.41 1.47 30.6 -0.23 0.02 18.4 78 4 0 1 4 0 0 0  DT 15 F DC 16 F DG 41 G DA 45 H DA 46 H DC 47 H D A 48 H DG 49 H 2 2.31 2.31 43.4 -0.90 -0.64 12.1 71 3 1 0 1 0 1 0  DT 12 E DG 13 E DA 14 E DT 15 F DC 16 F DA 17 F D A 18 F DC 19 F DA 20 F DG 21 F DT 43 H DC 44 H DA 45 H 3 1.28 1.35 48.7 -1.46 -0.66 12.1 82 3 1 4 1 0 2 0  DT 12 E DG 13 E DA 14 E DA 18 F DC 19 F DA 20 F DG 21 F 4 1.88 1.96 56.5 -1.81 -0.62 21.9 78 6 2 1 2 0 1 0  DC 2 E DA 3 E DA 4 E DT 25 F DG 27 F DA 28 F 5 1.45 1.60 57.9 -1.35 -0.35 24.5 83 8 1 1 4 0 0 0  DT 29 G DC 30 G DA 31 G DA 32 G DC 33 G DA 34 G DG 49 H DC 50 H DT 51 H DT 53 H DT 54 H 6 1.43 1.61 58.1 -0.99 -0.22 22.0 82 8 1 2 5 0 0 0  DT 29 G DC 30 G DA 31 G DA 32 G DC 33 G DA 34 G DT 40 G DG 41 G DA 48 H DG 49 H DT 53 H DT 54 H 7 1.41 1.46 63.8 -0.92 -0.15 23.1 79 10 1 1 7 2 0 0  DT 15 F DC 16 F DT 29 G DC 30 G DA 31 G DA 32 G DC 33 G DA 45 H DA 46 H DC 47 H DT 53 H DT 54 H 8 1.17 1.31 99.2 -0.69 -0.20 19.1 78 9 1 1 7 0 1 0  DA 3 E DA 4 E DC 5 E DT 15 F DC 16 F DA 17 F DA 18 F DC 19 F DG 27 F DA 28 F DT 43 H DC 44 H DA 45 H Residue-type_colouring Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C Acknowledgement Pores were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.