PDBsum entry 1mdy Go to PDB code:  Tunnel analysis for: 1mdy calculated with MOLE 2.0 PDB id 1mdy Tunnels calculated on whole structure Tunnels calculated excluding ligands View options MOLEonline 2.0 manipulation and visualization with HETATM: without HETATM:   2 tunnels, coloured by tunnel radius 2 tunnels, coloured by tunnel radius 2 tunnels, coloured as in list below Tunnels are interior spaces connected with the protein surrounding. Only channels longer than 15 Å are shown. Tunnels Free R Length HPathy HPhob Polar Rel Mut Residue..type Ligands Radius 1 1.25 1.37 31.3 -0.85 -0.11 24.9 80 5 1 0 3 0 0 0  DG 7 E DC 8 E DA 17 F DA 18 F DC 19 F DA 20 F DT 43 H 2 1.20 1.34 33.5 0.08 0.04 17.5 75 5 2 0 4 0 1 0  DA 3 E DA 4 E DC 5 E DA 6 E DG 7 E DC 8 E DA 20 F DG 21 F Residue-type_colouring Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C Acknowledgement Tunnels were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.