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PDBsum entry 1md4

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Top Page protein ligands Protein-protein interface(s) clefts links
Cleft analysis for: 1md4 PDB id
1md4
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Binding-site(s)
Binding-surface(s)
Coloured by
 cleft (as in table below)
 closest atom type
 residue type
 residue conservation
Clefts
R1
ratio
Accessible
vertices
Buried
vertices
Average
depth
Residue..type
Ligands
Volume
1 7740.14 3.42 70.87 1 14.30 1 17.21 1 14 14 32 29 16 16 3 GSH 3001[A], GSH 4001[B] (40 atoms)
2 2261.25 0.00 66.73 4 10.29 2 9.50 2 5 5 10 10 3 4 1  
3 807.05 0.00 67.48 3 8.44 4 7.79 6 4 2 3 3 2 6 0  
4 543.38 0.00 63.88 7 5.62 7 8.29 3 2 1 3 7 1 2 0  
5 443.81 0.00 59.29 8 5.34 9 5.58 9 1 1 3 7 1 1 0  
6 367.45 0.00 68.43 2 9.47 3 5.86 7 1 1 3 3 1 1 0  
7 472.50 0.00 57.84 10 7.03 5 5.79 8 2 2 3 3 2 1 0 MES 2001[B] (12 atoms)
8 392.77 0.00 59.15 9 4.79 10 5.02 10 2 2 3 3 2 1 0 MES 1001[A] (10 atoms)
9 309.66 0.00 65.48 5 5.42 8 7.92 4 1 2 1 2 2 2 0  
10 288.98 0.00 65.44 6 6.66 6 7.87 5 1 2 1 2 1 2 0  
 Protein structure

Residue-type_colouring
Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine
H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C
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