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Ligand clusters for UniProt code P02185

Ligand clusters for P02185: Myoglobin OS=Physeter catodon GN=MB PE=1 SV=2

Top 6 (of 30) ligand clusters
Cluster 1.
43 ligand types
275 ligands
Cluster 2.
6 ligand types
9 ligands
Cluster 3.
1 ligand type
4 ligands
Cluster 4.
4 ligand types
21 ligands
Cluster 5.
2 ligand types
61 ligands
Cluster 6.
2 ligand types
116 ligands
Representative protein: 101mA  
 

Structures

PDB   Schematic diagram
101mA    
1f6hA    
2mgaA    
3h58A    
3a2gA    
 more ...

 

 Cluster 1 contains 43 ligand types (of which only 20 are listed. Click for all)

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Ligand Description


 
1. Ligand: DMS × 1
dimethyl sulfoxide
Dimethyl sulfoxide
PDB code: 4h0b(A).

_Zn
 
2. Metal: _ZN × 1
PDB code: 3m3b(A).


 
3. Ligand: HEM × 108
Protoporphyrin IX containing fe
PDB codes: 102m(A), 108m(A), 1a6k(A), 1a6n(A), 1abs(A), 1bz6(A), 1bzp(A), 1ch1(A), 1ch2(A), 1ch3(A), 1ch5(A), 1ch7(A), 1ch9(A), 1cik(A), 1cio(A), 1co8(A), 1co9(A), 1cp0(A), 1cp5(A), 1cpw(A), 1do3(A), 1do4(A), 1dti(A), 1duk(A), 1dxd(A), 1ebc(A), 1f63(A), 1f6h(A), 1fcs(A), 1j52(A), 1jp6(A), 1jp8(A), 1jp9(A), 1jpb(A), 1lue(A), 1mbd(A), 1mgn(A), 1mlg(A), 1mlh(A), 1mlk(A), 1mll(A), 1mln(A), 1mlo(A), 1mlr(A), 1mls(A), 1moa(A), 1mob(A), 1mod(A), 1mti(A), 1mtj(A), 1mtk(A), 1o16(A), 1obm(A), 1ofj(A), 1ofk(A), 1swm(A), 1u7s(A), 1vxa(A), 1vxb(A), 1vxd(A), 1vxe(A), 1vxg(A), 1vxh(A), 1wvp(A), 2blh(A), 2bli(A), 2bwh(A), 2e2y(A), 2mbw(A), 2mgb(A), 2mgd(A), 2mge(A), 2mgg(A), 2mgh(A), 2mgi(A), 2mgj(A), 2mgl(A), 2oh8(A), 2oh9(A), 2oha(A), 2ohb(A), 2spm(A), 2spo(A), 2w6w(A), 2w6x(A), 2w6y(A), 3a2g(A), 3ecl(A), 3h57(A), 3h58(A), 3k9z(A), 3m38(A), 3m39(A), 3m3a(A), 3m3b(A), 3mn0(A), 3o89(A), 3ogb(A), 3u3e(A), 4fwx(A), 4fwy(A), 4fwz(A), 4h07(A), 4it8(A), 4lpi(A), 4mbn(A), 4tyx(A), 5mbn(A).


 
4. Ligand: HEM-CMO × 65
HEM=Protoporphyrin IX containing fe, CMO=Carbon monoxide.
PDB codes: 1a6g(A), 1ajg(A), 1ajh(A), 1bzr(A), 1do1(A), 1do7(A), 1dxc(A), 1jw8(A), 1mbc(A), 1mcy(A), 1mlf(A), 1mlj(A), 1mlm(A), 1mlq(A), 1mlu(A), 1moc(A), 1myf(A), 1mym(A), 1myz(A), 1mz0(A), 1spe(A), 1vxc(A), 1vxf(A), 2blj(M), 2bw9(M), 2g0r(A), 2g0s(A), 2g0v(A), 2g0x(A), 2g0z(A), 2g10(A), 2g11(A), 2g12(A), 2g14(A), 2mb5(A), 2mga(A), 2mgc(A), 2mgf(A), 2mgk(A), 2spl(A), 2zsn(A), 2zso(A), 2zsp(A), 2zsq(A), 2zsr(A), 2zss(A), 2zst(A), 2zsx(A), 2zsy(A), 2zsz(A), 2zt0(A), 2zt1(A), 2zt2(A), 2zt3(A), 2zt4(A), 3e4n(A), 3e55(A), 3e5i(A), 3e5o(A), 3ecx(A), 3ecz(A), 3ed9(A), 3eda(A), 3edb(A), 3nml(A).


 
5. Ligand: SO4 × 23
Sulfate ion
PDB codes: 1a6k(A), 1bz6(A), 1fcs(A), 1jp6(A), 1jp8(A), 1jp9(A), 1jpb(A), 1l2k(A), 1vxb(A), 1vxe(A), 1vxh(A), 1yoh(A), 2ekt(A), 2eku(A), 2oh8(A), 2oh9(A), 2oha(A), 2ohb(A), 2w6w(A), 3a2g(A), 3u3e(A), 4h07(A), 4h0b(A).


 
6. Ligand: HEM-OXY × 8
HEM=Protoporphyrin IX containing fe, OXY=Oxygen molecule.
PDB codes: 1a6m(A), 1f65(A), 1ltw(A), 1mbo(A), 2mgm(A), 2spn(A), 2z6s(A), 4h0b(A).


 
7. Ligand: HEM-NBN × 7
HEM=Protoporphyrin IX containing fe, NBN=N-Butyl isocyanide.
PDB codes: 101m(A), 103m(A), 104m(A), 105m(A), 107m(A), 111m(A), 2myc(A).


 
8. Ligand: PO4 × 6
Phosphate ion
PDB codes: 1j3f(A), 1ufj(A), 1ufp(A), 1v9q(A), 2eb8(A),


 
9. Ligand: HEM-ENC × 4
HEM=Protoporphyrin IX containing fe, ENC=Ethyl isocyanide.
PDB codes: 106m(A), 109m(A), 2mya(A), 2mye(A).


 
10. Ligand: CZM × 3
'N,N'-Bis-(2-Hydroxy-3-Methyl-Benzylidene)-Benzene-1, 2-Diamine'
PDB codes: 1j3f(A), 1ufj(A), 1v9q(A).

Fe2
 
11. Metal: FE2 × 3
PDB codes: 3k9z(A), 3m39(A), 4mxk(A).


 
12. Ligand: HEM-IMD × 3
HEM=Protoporphyrin IX containing fe, IMD=Imidazole.
PDB codes: 1irc(A), 1mbi(A), 1u7r(A).


 
13. Ligand: ZNH × 3
Protoporphyrin IX containing zn
PDB codes: 3ase(A), 4mxk(A), 4mxl(A).

_Cu
 
14. Metal: _CU × 3
PDB codes: 3m3a(A), 3mn0(A), 4fwy(A).


 
15. Ligand: BLA × 2
Biliverdine IX alpha
PDB codes: 1bvc(A), 1bvd(A).


 
16. Ligand: COH × 2
Protoporphyrin IX containing co
PDB codes: 1yog(A), 1yoh(A).


 
17. Ligand: HEM-CYN × 2
CYN=Cyanide ion, HEM=Protoporphyrin IX containing fe.
PDB codes: 1h1x(A), 2jho(A).


 
18. Ligand: HEM-DOD × 2
HEM=Protoporphyrin IX containing fe, DOD=.
PDB codes: 1cq2(A), 1l2k(A).


 
19. Ligand: HEM-MNC × 2
HEM=Protoporphyrin IX containing fe, MNC=Methyl isocyanide.
PDB codes: 110m(A), 2myb(A).


 
20. Ligand: HEM-NPN × 2
HEM=Protoporphyrin IX containing fe, NPN=N-Propyl isocyanide.
PDB codes: 112m(A), 2myd(A).

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 Cluster 2 contains 6 ligand types

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Ligand Description


 
1. Ligand: PO4 × 4
Phosphate ion
PDB codes: 1bvc(A), 1j3f(A), 1v9q(A), 2ef2(A).


 
2. Ligand: GOL × 1
Glycerol
PDB code: 2w6w(A).


 
3. Ligand: ND4 × 1
Ammonium cation with d
PDB code: 2mb5(A).


 
4. Ligand: RUO × 1
Oxo-Centered triruthenium cluster
PDB code: 3ase(A).


 
5. Ligand: SO4 × 1
Sulfate ion
PDB code: 3ogb(A).

_Cu
 
6. Metal: _CU × 1
PDB code: 4fwy(A).

 

 Cluster 3 contains 1 ligand type

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Ligand Description


 
1. Ligand: GLC-GLC × 4
GLC=Alpha-D-Glucose.
PDB codes: 1do1(A), 1do3(A), 1do4(A), 1do7(A).

 

 Cluster 4 contains 4 ligand types

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Ligand Description


 
1. Ligand: SO4 × 17
Sulfate ion
PDB codes: 1do1(A), 1do3(A), 1do4(A), 1do7(A), 1dxc(A), 1dxd(A), 1f65(A), 1jp9(A), 1jpb(A), 1jw8(A), 1wvp(A), 2e2y(A), 2ekt(A), 2w6w(A), 2w6y(A), 3ase(A), 3ogb(A).


 
2. Ligand: GOL × 2
Glycerol
PDB codes: 2eb9(A), 3a2g(A).


 
3. Ligand: ND4 × 1
Ammonium cation with d
PDB code: 2mb5(A).


 
4. Ligand: RUO × 1
Oxo-Centered triruthenium cluster
PDB code: 3ase(A).

 

 Cluster 5 contains 2 ligand types

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Ligand Description


 
1. Ligand: SO4 × 60
Sulfate ion
PDB codes: 104m(A), 105m(A), 1a6g(A), 1a6k(A), 1a6m(A), 1a6n(A), 1ajg(A), 1ajh(A), 1bz6(A), 1bzp(A), 1bzr(A), 1ebc(A), 1l2k(A), 1mbc(A), 1mbd(A), 1mbi(A), 1mbo(A), 1spe(A), 1vxa(A), 1vxb(A), 1vxc(A), 1vxd(A), 1vxe(A), 1vxf(A), 1vxg(A), 1vxh(A), 1yog(A), 1yoh(A), 1yoi(A), 2jho(A), 2mya(A), 2myb(A), 2myc(A), 2myd(A), 2mye(A), 2zsn(A), 2zso(A), 2zsp(A), 2zsq(A), 2zsr(A), 2zss(A), 2zst(A), 2zsx(A), 2zsy(A), 2zsz(A), 2zt0(A), 2zt1(A), 2zt2(A), 2zt3(A), 2zt4(A), 3e4n(A), 3e55(A), 3e5i(A), 3e5o(A), 3ecl(A), 3ecx(A), 3ecz(A), 3ed9(A), 3eda(A), 3edb(A).


 
2. Ligand: GOL × 1
Glycerol
PDB code: 2e2y(A).

 

 Cluster 6 contains 2 ligand types

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Ligand Description


 
1. Ligand: SO4 × 112
Sulfate ion
PDB codes: 101m(A), 102m(A), 103m(A), 106m(A), 107m(A), 108m(A), 109m(A), 110m(A), 111m(A), 112m(A), 1abs(A), 1ch1(A), 1ch2(A), 1ch3(A), 1ch5(A), 1ch7(A), 1ch9(A), 1cik(A), 1cio(A), 1co8(A), 1co9(A), 1cp0(A), 1cp5(A), 1cpw(A), 1dxc(A), 1dxd(A), 1f63(A), 1f65(A), 1fcs(A), 1iop(A), 1j52(A), 1jp6(A), 1jp8(A), 1jp9(A), 1jpb(A), 1jw8(A), 1ltw(A), 1lue(A), 1mcy(A), 1mgn(A), 1mlf(A), 1mlg(A), 1mlh(A), 1mlj(A), 1mlk(A), 1mll(A), 1mlm(A), 1mln(A), 1mlo(A), 1mlq(A), 1mlr(A), 1mls(A), 1mlu(A), 1moa(A), 1mob(A), 1moc(A), 1mod(A), 1mti(A), 1mtj(A), 1mtk(A), 1mym(A), 1myz(A), 1mz0(A), 1o16(A), 1obm(A), 1ofj(A), 1ofk(A), 1swm(A), 1tes(A), 1wvp(A), 2e2y(A), 2eku(A), 2g0r(A), 2g0s(A), 2g0v(A), 2g0x(A), 2g0z(A), 2g10(A), 2g11(A), 2g12(A), 2g14(A), 2mbw(A), 2mga(A), 2mgb(A), 2mgc(A), 2mgd(A), 2mge(A), 2mgf(A), 2mgg(A), 2mgh(A), 2mgi(A), 2mgj(A), 2mgk(A), 2mgl(A), 2mgm(A), 2oh8(A), 2oh9(A), 2oha(A), 2ohb(A), 2spl(A), 2spm(A), 2spn(A), 2spo(A), 2w6w(A), 2z6s(A), 2z6t(A), 3a2g(A), 3ase(A), 3nml(A), 3u3e(A), 4h07(A), 4h0b(A).


 
2. Ligand: PO4 × 4
Phosphate ion
PDB codes: 1j3f(A), 1ufj(A), 1ufp(A), 1v9q(A).

 

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